miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
Query: 61 gtcacaaaagtgatcattggcaggtgtggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtcacaaaagtgatcattggcaggtgtggc 90
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
Query: 61 gtcacaaaagtgatcattggcaggtgtggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtcacaaaagtgatcattggcaggtgtggc 90
>30861_ppy-mir-153:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
Query: 61 gtcacaaaagtgatcattggcaggtgtggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtcacaaaagtgatcattggcaggtgtggc 90
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctggcttcagttgcata 60
Query: 61 gtcacaaaagtgatcattggcaggtgtggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 gtcacaaaagtgatcattggcaggtgtggc 90
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcacggctgccagcgtcatttttgtgatctgcagctagtattctcactccagttgcata 60
Query: 61 gtcacaaaagtgatcattggcaggtgtggc 90
|||||||||||||||| |||||||||||||
Sbjct: 61 gtcacaaaagtgatcactggcaggtgtggc 90
>31508_oan-mir-153:mirbase
Length = 145
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 ctcacagctgccagtgtcatttttgtgatctgcagct-agtattctcactccagttgcat 59
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 42 ctcacagctgccagtgtcatttttgtgatctgcagcttagtactctggctccagttgcat 101
Query: 60 agtcacaaaagtgatcattggcaggtgtggc 90
|||||||||||||||||||||||||||||||
Sbjct: 102 agtcacaaaagtgatcattggcaggtgtggc 132
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 129 bits (65), Expect = 4e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaag 60
Query: 71 tgatcattg 79
|||||||||
Sbjct: 61 tgatcattg 69
>34326_dre-mir-153c:mirbase
Length = 151
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 38 ccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaa 97
Query: 71 tgatcattggcaggtgtg 88
|||||||||| |||||||
Sbjct: 98 tgatcattggtaggtgtg 115
>34609_fru-mir-153b:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
Query: 71 tgatcattggcaggtgtg 88
||| ||||||||||||||
Sbjct: 67 tgagcattggcaggtgtg 84
>34756_tni-mir-153b:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
Query: 71 tgatcattggcaggtgtg 88
||| ||||||||||||||
Sbjct: 67 tgagcattggcaggtgtg 84
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 16 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 75
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
Query: 76 attggcag 83
|||||||
Sbjct: 63 gttggcag 70
>25972_gga-mir-153:mirbase
Length = 87
Score = 81.8 bits (41), Expect = 8e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
||||||||||||||||||||| | |||||||||| | | | ||||||||||||||||||
Sbjct: 7 tgccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaa 66
Query: 68 aagtgatcattgg 80
|||||||||||||
Sbjct: 67 aagtgatcattgg 79
>26729_cfa-mir-153:mirbase
Length = 80
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>28311_ggo-mir-153:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>30248_ptr-mir-153:mirbase
Length = 86
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>32760_rno-mir-153:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>34004_ssc-mir-153:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 68
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 69 agtgatcattgg 80
||||||||||||
Sbjct: 68 agtgatcattgg 79
>34608_fru-mir-153a:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaa 69
||||||||||||||||||| | |||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 60
Query: 70 gtgatcattgg 80
|||||||||||
Sbjct: 61 gtgatcattgg 71
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
|||| |||||||||||||||| | |||||||||| | | | ||||||||||||||||||
Sbjct: 7 tgccggtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaa 66
Query: 68 aagtgatcattgg 80
|||||||||||||
Sbjct: 67 aagtgatcattgg 79
>34324_dre-mir-153a:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
Query: 68 aagtgatcattgg 80
|||||||||||||
Sbjct: 64 aagtgatcattgg 76
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 tgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaagtga 73
||||||||||||||| | |||||||||| | | | ||||||||||||||||||||||||
Sbjct: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
Query: 74 tcattgg 80
|||||||
Sbjct: 61 tcattgg 67
>27056_eca-mir-153:mirbase
Length = 67
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 gtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaagtg 72
|||||||||||||||| | |||||||||| | | | |||||||||||||||||||||||
Sbjct: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
Query: 73 atcattg 79
|||||||
Sbjct: 61 atcattg 67
>34325_dre-mir-153b:mirbase
Length = 148
Score = 69.9 bits (35), Expect = 3e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 30 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 89
Query: 63 cacaaaa 69
|||||||
Sbjct: 90 cacaaaa 96
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 5e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 tgtcatttttgtgatctgcagctagtattctcactc-cagttgcatagtcacaaaagtga 73
||||||||||||||| ||||||| ||| | | || |||||||||||||||||||||||
Sbjct: 13 tgtcatttttgtgatttgcagcttgtaattttggtctcagttgcatagtcacaaaagtga 72
Query: 74 tcattggcaggtg 86
|||| ||||||||
Sbjct: 73 tcatgggcaggtg 85
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
|||||||||||||||||||| | |||||||||| | | | ||||||||||||||||||
Sbjct: 7 tgccagtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaa 66
Query: 68 aagtgatcattgg 80
||||||| |||||
Sbjct: 67 aagtgattattgg 79
>31889_mmu-mir-153:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 gtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaagtg 72
||||||||||||||| | |||||||||| | | | |||||||||||||||||||||||
Sbjct: 3 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 62
Query: 73 atcattg 79
|||||||
Sbjct: 63 atcattg 69
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 15 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 74
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
Query: 75 cattgg 80
||||||
Sbjct: 68 cattgg 73
>34755_tni-mir-153a:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgatcattgg 80
|||||||||||||||||||||||||||||
Sbjct: 44 agttgcatagtcacaaaagtgatcattgg 72
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 50 ccagttgcatagtcacaaaagtgatcat 77
||||||||||||||||||||||||||||
Sbjct: 45 ccagttgcatagtcacaaaagtgatcat 72
>25502_pma-mir-153-2:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgatcat 77
||||||||||||||||||||||||||
Sbjct: 45 agttgcatagtcacaaaagtgatcat 70
>34826_spu-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgat 74
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>38870_lgi-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgatc 75
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>38755_cte-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgatc 75
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>24838_cin-mir-153:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgatcat 77
||||||||||| ||||||||||||||
Sbjct: 64 agttgcatagtaacaaaagtgatcat 89
>34882_sko-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgat 74
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>34974_isc-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgat 74
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>35014_dpu-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgat 74
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>38118_bma-mir-153:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgcatagtcacaaaagtgat 74
|||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70
