miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27514_age-mir-194:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|||||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|||||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>28321_ggo-mir-194:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|||||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|||||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>30269_ptr-mir-194:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|||||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>30885_ppy-mir-194:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgctgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgttgttacttttgatggttaccaa 85
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 145 bits (73), Expect = 6e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgtta 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtggactgggtaccaatttccagtggagatgctgtta 68
Query: 69 cttttgatggttaccaa 85
|||||||||||||||||
Sbjct: 69 cttttgatggttaccaa 85
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 21 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttacttttg 80
Query: 75 atgg 78
||||
Sbjct: 81 atgg 84
>26750_cfa-mir-194:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttt 72
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtggattgtgtgccaatttccagtggagatgctgttacttt 58
>34023_ssc-mir-194:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 75 a 75
|
Sbjct: 71 a 71
>34024_ssc-mir-194:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 75 a 75
|
Sbjct: 71 a 71
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 8 tatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgtt 67
||||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||
Sbjct: 8 tatcaggtgtaacagcaactccatgtggact-tgtccgtatt-ccagtggagatgctgtt 65
Query: 68 acttttgatgg 78
|||||||||||
Sbjct: 66 acttttgatgg 76
>25667_xla-mir-194:mirbase
Length = 79
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
Query: 74 gatgg 78
|||||
Sbjct: 71 gatgg 75
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 75.8 bits (38), Expect = 4e-15
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgtta 68
|||| |||||||||||||||||||||||||||| | || | ||||||||| ||||||||
Sbjct: 9 atcacgtgtaacagcaactccatgtggactgtgca-cagatcccagtggagctgctgtta 67
Query: 69 cttttgatgg 78
||||||||||
Sbjct: 68 cttttgatgg 77
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 71.9 bits (36), Expect = 7e-14
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 4 gtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgc 63
||||||||| |||||||||||||||||||||| | || | |||||||||||||| ||
Sbjct: 11 gtgttatcatatgtaacagcaactccatgtggattatg--ctgatttccagtggagaggc 68
Query: 64 tgttacttttgatgg 78
|||||||||||||||
Sbjct: 69 tgttacttttgatgg 83
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 4e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
Query: 75 atgg 78
||||
Sbjct: 69 atgg 72
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 4e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
Query: 75 atgg 78
||||
Sbjct: 69 atgg 72
>25984_gga-mir-194:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 14 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 71
Query: 75 at 76
||
Sbjct: 72 at 73
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
|||||||||||||||||||||||||||| | | ||||||||||| ||||||||||| |
Sbjct: 6 gtgtaacagcaactccatgtggactgtgctcgga-ttccagtggagctgctgttacttct 64
Query: 74 gat 76
|||
Sbjct: 65 gat 67
>25514_pma-mir-194:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtgga 36
|||| |||||||||||||||||||||||
Sbjct: 11 atcaggtgtaacagcaactccatgtgga 38
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 51 ccagtggagatgctgttacttttgatgg 78
||||||||| | ||||||||||||||||
Sbjct: 52 ccagtggagttactgttacttttgatgg 79
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34621_fru-mir-194:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 8 tgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
