miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27624_sla-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>27801_mml-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>28328_ggo-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>28523_hsa-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>30116_ppa-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>30282_ptr-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>30900_ppy-mir-204:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>32794_rno-mir-204:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagcccttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
>34034_ssc-mir-204:mirbase
Length = 109
Score = 194 bits (98), Expect = 9e-51
Identities = 108/110 (98%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 ggctacagtctttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctacagtccttct-catgtgactcgtggacttccctttgtcatcctatgcctgagaat 59
Query: 61 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atatgaaggaggctgggaaggcaaagggacgttcaattgtcatcactggc 109
>33282_bta-mir-204:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 11 tttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaagga 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaagga 60
Query: 71 ggctgggaaggcaaagggacgttcaattgtcatcac 106
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctgggaaggcaaagggacgttcaattgtcatcac 96
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 139 bits (70), Expect = 5e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 15 ttcatgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggct 74
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 15 ttcatgtgacccgtggacttccctttgtcatcctatgcctgaaaatatatgaagggggcg 74
Query: 75 gggaaggcaaagggacgttcaattgtcatc 104
|||||||||||||||||||||| |||||||
Sbjct: 75 gggaaggcaaagggacgttcaactgtcatc 104
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 135 bits (68), Expect = 7e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 18 atgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctggg 77
||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 atgtgacctgtgggcttccctttgtcatcctatgcctgagaatatatgaagggggctggg 60
Query: 78 aaggcaaagggacgttcaattgtcatca 105
|||||||||||||||||| |||||||||
Sbjct: 61 aaggcaaagggacgttcagttgtcatca 88
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 135 bits (68), Expect = 7e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 28 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
Query: 88 gacgttca 95
||||||||
Sbjct: 61 gacgttca 68
>31930_mmu-mir-204:mirbase
Length = 68
Score = 135 bits (68), Expect = 7e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 28 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagg 60
Query: 88 gacgttca 95
||||||||
Sbjct: 61 gacgttca 68
>26503_tgu-mir-204-1:mirbase
Length = 72
Score = 121 bits (61), Expect = 1e-28
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 26 cgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaa 85
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 4 cgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctggggaggcaaa 63
Query: 86 gggacgttc 94
|||||||||
Sbjct: 64 gggacgttc 72
>26764_cfa-mir-204:mirbase
Length = 60
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 33 ttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagggacgt 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagggacgt 60
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 16 tcatgtgactcgtggacttccctttgtcatcctatgcctg 55
||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tcatgtgacctgtggacttccctttgtcatcctatgcctg 40
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 19 tgtgactcgtggacttccctttgtcatcctatgcctgagaat 60
|||||| | ||| |||||||||||||||||||||||||||||
Sbjct: 17 tgtgacccatgggcttccctttgtcatcctatgcctgagaat 58
>30906_ppy-mir-211:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcct 48
||||||||| ||||||||||||||||||||||
Sbjct: 10 catgtgacttgtggacttccctttgtcatcct 41
>26000_gga-mir-211:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgag 57
||||||||||||||||||||||||||
Sbjct: 9 cttccctttgtcatcctatgcctgag 34
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgag 57
||||||||||||||||||||||||||
Sbjct: 10 cttccctttgtcatcctatgcctgag 35
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgag 57
||||||||||||||||||||||||||
Sbjct: 10 cttccctttgtcatcctatgcctgag 35
>26507_tgu-mir-204-5:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgag 57
||||||||||||||||||||||||||
Sbjct: 2 cttccctttgtcatcctatgcctgag 27
>26771_cfa-mir-211:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcctatgcct 54
||||||||| |||| ||||||||||||||||| |||||
Sbjct: 6 catgtgacttgtgggcttccctttgtcatcctttgcct 43
>27422_mdo-mir-204:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 18 atgtgactcgtggacttccctttgtcatcctatgcctg 55
||||||| |||| ||||||||||||||||||||||||
Sbjct: 10 atgtgacctgtgggcttccctttgtcatcctatgcctg 47
>27807_mml-mir-211:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcctatgcct 54
||||||||| |||| ||||||||||||||||| |||||
Sbjct: 9 catgtgacttgtgggcttccctttgtcatcctttgcct 46
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 5 gtgggcttccctttgtcatcctatgcctg 33
>34632_fru-mir-204:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 9 gtgggcttccctttgtcatcctatgcctg 37
>34779_tni-mir-204a:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 9 gtgggcttccctttgtcatcctatgcctg 37
>27095_eca-mir-211:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 19 tgtgactcgtggacttccctttgtcatcctatgcct 54
||||||| |||| ||||||||||||||||| |||||
Sbjct: 1 tgtgacttgtgggcttccctttgtcatcctttgcct 36
>28235_mne-mir-211:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcct 48
||||||||| |||| |||||||||||||||||
Sbjct: 9 catgtgacttgtgggcttccctttgtcatcct 40
>28529_hsa-mir-211:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcct 48
||||||||| |||| |||||||||||||||||
Sbjct: 10 catgtgacttgtgggcttccctttgtcatcct 41
>30288_ptr-mir-211:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcct 48
||||||||| |||| |||||||||||||||||
Sbjct: 10 catgtgacttgtgggcttccctttgtcatcct 41
>31530_oan-mir-204:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctg 55
||||||||||||||||||||||||
Sbjct: 30 cttccctttgtcatcctatgcctg 53
>34780_tni-mir-204b:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 28 tggacttccctttgtcatcctatgcctg 55
||||||||||||||| ||||||||||||
Sbjct: 11 tggacttccctttgttatcctatgcctg 38
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 ttccctttgtcatcctatgcctg 55
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 ttccctttgtcatcctatgcctg 55
|||||||||||||||||||||||
Sbjct: 37 ttccctttgtcatcctatgcctg 59
>31938_mmu-mir-211:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcct 54
|||| ||||||||||||||||| |||||
Sbjct: 20 gtgggcttccctttgtcatcctttgcct 47
