miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27807_mml-mir-211:mirbase
Length = 109
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 tcactggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tcactggccatgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagcag 60
Query: 61 ggcagggacagcaaaggggtgctcagttgtcacttcccacagcacagag 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcagggacagcaaaggggtgctcagttgtcacttcccacagcacagag 109
>28529_hsa-mir-211:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 4 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 64
Query: 64 agggacagcaaaggggtgctcagttgtcacttcccacagcac 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agggacagcaaaggggtgctcagttgtcacttcccacagcac 106
>30288_ptr-mir-211:mirbase
Length = 109
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 4 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 64
Query: 64 agggacagcaaaggggtgctcagttgtcacttcccacagcac 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agggacagcaaaggggtgctcagttgtcacttcccacagcac 106
>30906_ppy-mir-211:mirbase
Length = 110
Score = 188 bits (95), Expect = 6e-49
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 7 gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gccatgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagg 67
Query: 67 gacagcaaaggggtgctcagttgtcacttcccacagcac 105
|||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gacagcaaaggggtgctcagttgtcacttcccacagcac 106
>26771_cfa-mir-211:mirbase
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 4 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 63
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 1 ctggccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggc 60
Query: 64 agggacagcaaaggggtgctcagttgtcacttcccacagc 103
|||||||||||||||||||||||||||||| || ||||||
Sbjct: 61 agggacagcaaaggggtgctcagttgtcacctctcacagc 100
>27095_eca-mir-211:mirbase
Length = 87
Score = 133 bits (67), Expect = 3e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
Query: 71 gcaaaggggtgctcagttgtcac 93
|||||||||||||||||||||||
Sbjct: 61 gcaaaggggtgctcagttgtcac 83
>33288_bta-mir-211:mirbase
Length = 110
Score = 123 bits (62), Expect = 3e-29
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| |||||||||||||||||||||||| ||| |||| |||||| |||||||||||
Sbjct: 12 tgtgacctgtgggcttccctttgtcatcctttgcccagggttctgagtggggcagggaca 71
Query: 71 gcaaaggggtgctcagttgtcacttcccacagca 104
||||||||||||||||| ||||| ||||||||||
Sbjct: 72 gcaaaggggtgctcagtcgtcacctcccacagca 105
>31938_mmu-mir-211:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 3e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| |||||||||||||||||||||||| ||||||| ||||||| |||| |||||
Sbjct: 12 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 71
Query: 71 gcaaaggggtgctcagttgtcac 93
||||||||| ||||||| |||||
Sbjct: 72 gcaaaggggggctcagtggtcac 94
>32802_rno-mir-211:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 3e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| | |||||||||||||||||||||| ||||||| ||||||| ||||| |||||
Sbjct: 12 tgtgacctctgggcttccctttgtcatcctttgcctaggcctctgagtggggcaaggaca 71
Query: 71 gcaaaggggtgctcagttgtcac 93
||||||||| ||||||| |||||
Sbjct: 72 gcaaaggggggctcagtggtcac 94
>34632_fru-mir-204:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 4e-13
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
Query: 71 gcaaaggggtgctcagttgtcac 93
|||||||| ||||||| ||||||
Sbjct: 60 gcaaagggatgctcagctgtcac 82
>27422_mdo-mir-204:mirbase
Length = 97
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 10 atgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggac 69
||||||| ||||||||||||||||||||||| |||| | || ||| ||||||||||
Sbjct: 10 atgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggac 69
Query: 70 agcaaaggggtgctcagttgtc 91
||||||||| ||||||| ||||
Sbjct: 70 agcaaagggatgctcagctgtc 91
>34779_tni-mir-204a:mirbase
Length = 93
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
Query: 71 gcaaaggggtgctcag 86
|||||||| |||||||
Sbjct: 60 gcaaagggatgctcag 75
>25996_gga-mir-204-2:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
|||||| ||||||||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 71 gcaaaggggtgctcagttgtc 91
|||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 atgtgacttgtgggcttccctttgtcatcct 40
||||||| |||||||||||||||||||||||
Sbjct: 1 atgtgacctgtgggcttccctttgtcatcct 31
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 18 tgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagg 77
||||||||||||||||||||||| |||| | | || || |||||||||||||||||
Sbjct: 4 tgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagg 63
Query: 78 ggtgctcag 86
| |||||||
Sbjct: 64 gatgctcag 72
>27624_sla-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>27801_mml-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>28232_mne-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>28328_ggo-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>28523_hsa-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>30116_ppa-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>30282_ptr-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>30900_ppy-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>32794_rno-mir-204:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgactcgtggacttccctttgtcatcct 48
>33282_bta-mir-204:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 7 catgtgactcgtggacttccctttgtcatcct 38
>34034_ssc-mir-204:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
||||||||| |||| |||||||||||||||||
Sbjct: 16 catgtgactcgtggacttccctttgtcatcct 47
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
|||||||| ||||| |||||||||||||||||
Sbjct: 2 catgtgacctgtggacttccctttgtcatcct 33
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 ggcagggacagcaaaggggtgctcag 86
|||||||||||||||||| |||||||
Sbjct: 67 ggcagggacagcaaagggatgctcag 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgggcttccctttgtcatcct 40
|||||||||||||||||||||
Sbjct: 26 tgggcttccctttgtcatcct 46
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 9 catgtgacttgtgggcttccctttgtcatcct 40
|||||||| |||| |||||||||||||||||
Sbjct: 17 catgtgacccgtggacttccctttgtcatcct 48
