miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>30385_ptr-mir-454:mirbase
          Length = 114

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60

                                                                 
Query: 61  gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcag 114




>27916_mml-mir-454:mirbase
          Length = 115

 Score =  220 bits (111), Expect = 2e-58
 Identities = 114/115 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttct 60

                                                                  
Query: 61  gagtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggcagg 115
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61  gagtagtgcaatattgcttatagggttttggtgtttgggaagaacaatgggcagg 115




>33386_bta-mir-454:mirbase
          Length = 114

 Score =  190 bits (96), Expect = 2e-49
 Identities = 108/112 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgtttatcaccagatcctagaaccctatcaatattgtctctgctgtgtaaatagttctg 61
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 1   ctgtttattaccagatcctagaaccctatcgatattgtctctgctgtgtaaatagctctg 60

                                                               
Query: 62  agtagtgcaatattgcttatagggttttggtgtttggaaagaacaatgggca 113
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61  agtagtgcaatattgcttatagggttttggtgtttgggaagaacaatgggca 112




>31557_oan-mir-454:mirbase
          Length = 94

 Score =  135 bits (68), Expect = 8e-33
 Identities = 83/88 (94%)
 Strand = Plus / Plus

                                                                      
Query: 11 accagatcctagaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgca 70
          |||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 3  accagatcctggaaccctatcgatattgtctctgctgtgtaaatagctgtgagtagtgca 62

                                      
Query: 71 atattgcttatagggttttggtgtttgg 98
          ||||||||||||||||||| ||||||||
Sbjct: 63 atattgcttatagggttttagtgtttgg 90




>26852_cfa-mir-454:mirbase
          Length = 70

 Score =  123 bits (62), Expect = 3e-29
 Identities = 68/70 (97%)
 Strand = Plus / Plus

                                                                      
Query: 21 agaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgctta 80
          ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  agaaccctatcgatattgtctctgctgtgtaaatagctctgagtagtgcaatattgctta 60

                    
Query: 81 tagggttttg 90
          ||||||||||
Sbjct: 61 tagggttttg 70




>27187_eca-mir-454:mirbase
          Length = 69

 Score =  113 bits (57), Expect = 3e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 21 agaaccctatcaatattgtctctgctgtgtaaatagttctgagtagtgcaatattgctta 80
          ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1  agaaccctatcgatattgtctctgctgtgtaaatcgctctgagtagtgcaatattgctta 60

                   
Query: 81 tagggtttt 89
          |||||||||
Sbjct: 61 tagggtttt 69




>34474_dre-mir-454a:mirbase
          Length = 124

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 56  gttctgagtagtgcaatattgcttatagggtttt 89
           |||| |||||||||||||||||| ||||||||||
Sbjct: 69  gttcagagtagtgcaatattgctaatagggtttt 102




>34475_dre-mir-454b:mirbase
          Length = 116

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 61 gagtagtgcaatattgcttatagggt 86
          ||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggt 88




>26031_gga-mir-454:mirbase
          Length = 121

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 62 agtagtgcaatattgcttatagggt 86
          |||||||||||||||||||||||||
Sbjct: 70 agtagtgcaatattgcttatagggt 94




>26533_tgu-mir-454:mirbase
          Length = 73

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 62 agtagtgcaatattgcttatagggt 86
          |||||||||||||||||||||||||
Sbjct: 39 agtagtgcaatattgcttatagggt 63