miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatcaa 84
|||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatcaa 83
>27925_mml-mir-487b:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcgtgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>33393_bta-mir-487b:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 5 tacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagggtc 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 65 atccactttttcagtatc 82
||||||||||||||||||
Sbjct: 61 atccactttttcagtatc 78
>33854_oar-mir-487b:mirbase
Length = 106
Score = 143 bits (72), Expect = 2e-35
Identities = 82/84 (97%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
Query: 61 ggtcatccactttttcagtatcaa 84
|||||||||| |||||||||||||
Sbjct: 70 ggtcatccac-ttttcagtatcaa 92
>33855_oar-mir-487b:mirbase
Length = 106
Score = 143 bits (72), Expect = 2e-35
Identities = 82/84 (97%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
Query: 61 ggtcatccactttttcagtatcaa 84
|||||||||| |||||||||||||
Sbjct: 70 ggtcatccac-ttttcagtatcaa 92
>27193_eca-mir-487b:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>32176_mmu-mir-487b:mirbase
Length = 82
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 61
|||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatca 83
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>32931_rno-mir-487b:mirbase
Length = 82
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 61
|||||||||||||||||||||||||||||| |||| || || ||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatca 83
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>26857_cfa-mir-487b:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 15 gtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagggtcatccactt 72
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 58
>27924_mml-mir-487a:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
||||||||||||||||| ||||||| |||||| |||| | ||| |||||| |||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27192_eca-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33392_bta-mir-487a:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33852_oar-mir-487a:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||| ||||||| |||||||| |||||| | | | ||| |||||| |||||
Sbjct: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
Query: 61 ggtcatccactttttcagtatcaa 84
|| |||||| ||||||||||||||
Sbjct: 69 ggacatccagtttttcagtatcaa 92
>33853_oar-mir-487a:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
|||||||||| ||||||| |||||||| |||||| | | | ||| |||||| |||||
Sbjct: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
Query: 61 ggtcatccactttttcagtatcaa 84
|| |||||| ||||||||||||||
Sbjct: 69 ggacatccagtttttcagtatcaa 92
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 4 gtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagggt 63
||||||| |||||||||||||||| |||||| | | ||| |||||| |||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcatacaggga 60
Query: 64 catccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 catccagtttttcagtatc 79
>32890_rno-mir-376b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatcaa 84
|||||||||||||||||||||
Sbjct: 65 catccactttttcagtatcaa 85
>32891_rno-mir-376b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatcaa 84
|||||||||||||||||||||
Sbjct: 65 catccactttttcagtatcaa 85
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatca 83
||||||||||||||||||||
Sbjct: 63 catccactttttcagtatca 82
