miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30393_ptr-mir-489:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatacggcagctaaactgcta 83
|||||||||||||||||||||||
Sbjct: 61 catatacggcagctaaactgcta 83
>31026_ppy-mir-489:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatacggcagctaaactgctac 84
||||||||||||||||||||||||
Sbjct: 61 catatacggcagctaaactgctac 84
>27927_mml-mir-489:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatacggcagctaaactg 80
||||||||||||||||||||
Sbjct: 61 catatacggcagctaaactg 80
>26859_cfa-mir-489:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 gtggcagcttggtggccgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatacggcagctaaactgctac 84
|||||||||| |||||||||||||
Sbjct: 61 catatacggcggctaaactgctac 84
>27195_eca-mir-489:mirbase
Length = 85
Score = 121 bits (61), Expect = 8e-29
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacc-tttaggagtgacatc 59
|||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
Query: 60 acatatacggcagctaaactgctac 84
||||||||||| |||||||||||||
Sbjct: 61 acatatacggcggctaaactgctac 85
>33395_bta-mir-489:mirbase
Length = 82
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
Query: 61 catatacggcagctaaactgct 82
|||||| ||| ||||||||||
Sbjct: 61 catatatggcgactaaactgct 82
>26040_gga-mir-489:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 5e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
||||||||||||||||| ||||| |||||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 66
Query: 67 cggcagctaaactgct 82
|||| |||||||||||
Sbjct: 67 cggctgctaaactgct 82
>26539_tgu-mir-489:mirbase
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
||||||||||||||||| ||||| |||||||||| || |||||||||||||||| || ||
Sbjct: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
Query: 67 cggcagctaaactgct 82
|||| |||||||||||
Sbjct: 73 cggctgctaaactgct 88
>25864_xtr-mir-489:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 7e-14
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
|||| |||||||||||| ||||| |||||||| || |||||||||||||||| || ||
Sbjct: 7 gcttagtggtcgtatgtatgacgtcatttactggattttttaggagtgacatcatatgta 66
Query: 67 cggcagctaaactgct 82
|||| |||||||||||
Sbjct: 67 cggctgctaaactgct 82
>34487_dre-mir-489:mirbase
Length = 104
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 10 tggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatatacgg 69
|||||||||||||| ||||| ||||||||| || ||| |||||||||||| || |||||
Sbjct: 20 tggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatgtacgg 78
Query: 70 cagctaaactgctac 84
| |||||||||||||
Sbjct: 79 ctgctaaactgctac 93
>34656_fru-mir-489:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 6e-08
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
|||||||||||||||| ||||| ||||||||| | || |||||||||||| || ||
Sbjct: 19 gcttggtggtcgtatgcatgacgtcatttacttcgatgatt-ggagtgacatcatatgta 77
Query: 67 cggcagctaaactgctac 84
|||| |||||||||||||
Sbjct: 78 cggctgctaaactgctac 95
>32933_rno-mir-489:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 tgacatcacatatacggcagctaaactg 80
|||||||||||||| |||||||||||||
Sbjct: 62 tgacatcacatatatggcagctaaactg 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtga 27
||||||||||||| |||||||| ||||
Sbjct: 10 gtggcagcttggttgtcgtatgcgtga 36
>32178_mmu-mir-489:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 tgacatcacatatacggcagctaaactg 80
||||| |||||||| |||||||||||||
Sbjct: 62 tgacaccacatatatggcagctaaactg 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtga 27
||||||||||||| ||| |||||||||
Sbjct: 10 gtggcagcttggttgtcatatgtgtga 36
>34804_tni-mir-489:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 49 ggagtgacatcacatatacggcagctaaactgctac 84
|||||||||||| || |||||| ||||||| |||||
Sbjct: 50 ggagtgacatcatatgtacggctgctaaaccgctac 85
