miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41307_ptc-MIR160c:mirbase
          Length = 98

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 74/86 (86%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  tgcctggctccatgtatgacattttcagagaccatcggtatttccaatggcctccgtgaa 88
           ||||||||||| |||||| ||||| ||||| ||| ||||  ||| | ||||||||||| |
Sbjct: 11  tgcctggctccctgtatgccatttgcagagcccaccggttcttcga-tggcctccgtgga 69

                                     
Query: 89  tggcgtatgaggagcctagcatattc 114
           ||||||||||||||||  ||||||||
Sbjct: 70  tggcgtatgaggagccatgcatattc 95




>41306_ptc-MIR160b:mirbase
          Length = 98

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  tgcctggctccatgtatgacattttcagagaccatcggtatttccaatggcctccgtgaa 88
           ||||||||||| |||||| ||||| ||||| ||| ||| ||   | |||||||||||| |
Sbjct: 11  tgcctggctccctgtatgccatttgcagagcccaacgg-atcctcgatggcctccgtgga 69

                                     
Query: 89  tggcgtatgaggagcctagcatattc 114
           ||||||||||||||||  ||||||||
Sbjct: 70  tggcgtatgaggagccatgcatattc 95




>41219_csi-MIR160:mirbase
          Length = 143

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 75  atggcctccgtgaatggcgtatgaggagcctagcatattcca 116
           |||||||||||| |||||||||||||||||  ||||||||||
Sbjct: 78  atggcctccgtggatggcgtatgaggagccatgcatattcca 119




>41577_vvi-MIR160e:mirbase
          Length = 102

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 81/97 (83%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 25  tatatgcctggctccatgtatgacattttcagagaccatcggtatttccaatggcctccg 84
           ||||||||||||||| |||||| ||||| ||||| ||| ||| |  | | ||||||| ||
Sbjct: 7   tatatgcctggctccctgtatgccatttgcagagcccaccggcacat-cgatggccttcg 65

                                                
Query: 85  tgaatggcgtatgaggagcctagcatattccacatct 121
           || |||||||||||||||||  |||||| || |||||
Sbjct: 66  tggatggcgtatgaggagccatgcatatgccccatct 102




>41529_sly-MIR160a:mirbase
          Length = 129

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 85  tgaatggcgtatgaggagcctagcatattcc 115
           |||||||||||||||||||| ||||||||||
Sbjct: 78  tgaatggcgtatgaggagccaagcatattcc 108



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 24 gtatatgcctggctccatgtatgacattt 52
          |||||||||||||||| |||||| |||||
Sbjct: 15 gtatatgcctggctccctgtatgccattt 43




>40312_bra-MIR160a:mirbase
          Length = 127

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 79  cctccgtgaatggcgtatgaggagcctagcatatt 113
           ||||||||||||||||||||||||||  |||||||
Sbjct: 74  cctccgtgaatggcgtatgaggagccatgcatatt 108




>40662_mtr-MIR160e:mirbase
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  atggcgtatgaggagcctagcatattcc 115
           ||||||||||||||||| ||||||||||
Sbjct: 64  atggcgtatgaggagccaagcatattcc 91




>40659_mtr-MIR160b:mirbase
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  atggcgtatgaggagcctagcatattcc 115
           ||||||||||||||||| ||||||||||
Sbjct: 64  atggcgtatgaggagccaagcatattcc 91




>40436_gma-MIR160:mirbase
          Length = 119

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  atggcgtatgaggagcctagcatatt 113
           ||||||||||||||||| ||||||||
Sbjct: 79  atggcgtatgaggagccaagcatatt 104




>40019_ath-MIR160a:mirbase
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  cctccgtgaatggcgtatgaggagcc 104
           |||||||| |||||||||||||||||
Sbjct: 52  cctccgtggatggcgtatgaggagcc 77




>39807_aly-MIR160a:mirbase
          Length = 158

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  cctccgtgaatggcgtatgaggagcc 104
           |||||||| |||||||||||||||||
Sbjct: 90  cctccgtggatggcgtatgaggagcc 115