miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41844_bdi-MIR5175a:mirbase
          Length = 137

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 13  gtacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagc 72
           ||||||| || |||||||||| |||  |||| ||||||| |||| ||||||||||||| |
Sbjct: 25  gtacttcttctgttcctaaattcttaccgctgttttagttcaaatttgtactaaaacaac 84

                                   
Query: 73  gacaagtatttaggaacggaggga 96
           || ||| |||||||||||||||||
Sbjct: 85  gataagaatttaggaacggaggga 108



 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 19  cctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcgacaag 78
           ||||||||||||||| ||| ||| | ||||||| |||| ||| ||||||||||||  |||
Sbjct: 106 cctccgttcctaaattcttatcgttgttttagtacaaatttgaactaaaacagcggtaag 47

                      
Query: 79  tatttaggaac 89
            ||||||||||
Sbjct: 46  aatttaggaac 36




>41845_bdi-MIR5175b:mirbase
          Length = 141

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 14  tacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcg 73
           ||||||||| |||||||||| ||||||  | ||||||| |||| ||||| |||| |  ||
Sbjct: 30  tacttcctctgttcctaaattcttgtcattgttttagttcaaatttgtattaaagccacg 89

                                      
Query: 74  acaagtatttaggaacggagggagtat 100
           ||||| ||||||||| |||||||||||
Sbjct: 90  acaagaatttaggaatggagggagtat 116




>42669_tae-MIR1136:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 71 gcgacaagtatttaggaacggagggagta 99
          |||||||||| || |||||||||||||||
Sbjct: 29 gcgacaagtaattcggaacggagggagta 1




>41899_hvu-MIR5049:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 74 acaagtatttaggaacggagggagt 98
          |||||||||||||||| ||||||||
Sbjct: 25 acaagtatttaggaacagagggagt 1