miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>29085_hsa-mir-1244-1:mirbase
          Length = 85

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaaa 85




>29086_hsa-mir-1244-2:mirbase
          Length = 85

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaaa 85




>29087_hsa-mir-1244-3:mirbase
          Length = 85

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaaa 85




>30660_ptr-mir-1244-2:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30663_ptr-mir-1244-5:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30664_ptr-mir-1244-6:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>31304_ppy-mir-1244:mirbase
          Length = 85

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaaa 85




>30659_ptr-mir-1244-11:mirbase
          Length = 84

 Score =  165 bits (83), Expect = 6e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                 
Query: 61 tggtttgtatgagatggttaaaa 83
          |||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaa 84




>30666_ptr-mir-1244-8:mirbase
          Length = 84

 Score =  165 bits (83), Expect = 6e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 61

                                 
Query: 61 tggtttgtatgagatggttaaaa 83
          |||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaa 84




>30657_ptr-mir-1244-1:mirbase
          Length = 84

 Score =  159 bits (80), Expect = 4e-40
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactgtaagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30658_ptr-mir-1244-10:mirbase
          Length = 84

 Score =  159 bits (80), Expect = 4e-40
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgcgtatgtacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30665_ptr-mir-1244-7:mirbase
          Length = 84

 Score =  159 bits (80), Expect = 4e-40
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcttattctgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30667_ptr-mir-1244-9:mirbase
          Length = 84

 Score =  159 bits (80), Expect = 4e-40
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  tcttattccgagcattccagtaacttttttgtgtatatacttagctgtactataagtagt 60

                                  
Query: 61 tggtttgtatgagatggttaaaaa 84
          ||||||||||||||||||||||||
Sbjct: 61 tggtttgtatgagatggttaaaaa 84




>30662_ptr-mir-1244-4:mirbase
          Length = 84

 Score =  157 bits (79), Expect = 1e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcttattccgagcattccagtaacttttttgtgtatgtacttagctgtactataagtagt 60
          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2  tcttattccgagcattccagtaacttttttgtgtatgtactcagctgtactataagtagt 61

                                 
Query: 61 tggtttgtatgagatggttaaaa 83
          |||||||||||||||||||||||
Sbjct: 62 tggtttgtatgagatggttaaaa 84




>27287_eca-mir-1244:mirbase
          Length = 71

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 63/68 (92%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 cattccagtaacttt-tttgtgtatgtacttagctgtactataagtagttggtttgtatg 71
          ||||||||||||||| ||||  |||||||||||||||||||| ||| |||||||||||||
Sbjct: 4  cattccagtaactttctttgcatatgtacttagctgtactatgagtggttggtttgtatg 63

                  
Query: 72 agatggtt 79
          ||||||||
Sbjct: 64 agatggtt 71