miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>29103_hsa-mir-1255b-2:mirbase
          Length = 67

 Score =  131 bits (66), Expect = 6e-32
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 61

                
Query: 61 taagga 66
          ||||||
Sbjct: 62 taagga 67



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 38 aaaccactttctttgctcatccataag 64
          |||||||||||||||||||||| ||||
Sbjct: 28 aaaccactttctttgctcatccgtaag 2



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 1  cttacggatgagcaaagaaagtggttt 27
          |||| ||||||||||||||||||||||
Sbjct: 65 cttatggatgagcaaagaaagtggttt 39




>31317_ppy-mir-1255b-2:mirbase
          Length = 67

 Score =  123 bits (62), Expect = 2e-29
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  cttacggatgagcaaagaaagtggtttgcgcctcaagaaaccactttctttgctcatcca 60
          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2  cttacggatgagcaaagaaagtggtttgcgcctcaagaagccactttctttgctcatcca 61

                
Query: 61 taagga 66
          ||||||
Sbjct: 62 taagga 67



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 38 aaaccactttctttgctcatccataag 64
          |||||||||||||||||||||| ||||
Sbjct: 28 aaaccactttctttgctcatccgtaag 2



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 1  cttacggatgagcaaagaaagtgg 24
          |||| |||||||||||||||||||
Sbjct: 65 cttatggatgagcaaagaaagtgg 42




>31316_ppy-mir-1255b-1:mirbase
          Length = 60

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 34 caagaaaccactttctttgctcatcc 59
          ||||||||||||||||||||||||||
Sbjct: 26 caagaaaccactttctttgctcatcc 1



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  ggatgagcaaagaaagtggttt 27
          ||||||||||||||||||||||
Sbjct: 1  ggatgagcaaagaaagtggttt 22




>29102_hsa-mir-1255b-1:mirbase
          Length = 63

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 3  tacggatgagcaaagaaagtggttt 27
          |||||||||||||||||||||||||
Sbjct: 1  tacggatgagcaaagaaagtggttt 25



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 35 aagaaaccactttctttgctcatcc 59
          |||||||||||||||||||||||||
Sbjct: 28 aagaaaccactttctttgctcatcc 4




>27289_eca-mir-1255b:mirbase
          Length = 63

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 3  tacggatgagcaaagaaagtggttt 27
          ||||||| |||||||||||||||||
Sbjct: 1  tacggataagcaaagaaagtggttt 25



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 35 aagaaaccactttctttgctcatcc 59
          |||||||||||||||||||| ||||
Sbjct: 28 aagaaaccactttctttgcttatcc 4