miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32060_mmu-mir-409:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>33076_rno-mir-3581:mirbase
          Length = 80

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 21

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 20 gaaccccttttcggtatca 2




>32902_rno-mir-409:mirbase
          Length = 77

 Score =  153 bits (77), Expect = 2e-38
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 60

                           
Query: 62 aaccccttttcggtatc 78
          |||||||||||||||||
Sbjct: 61 aaccccttttcggtatc 77




>32903_rno-mir-409:mirbase
          Length = 77

 Score =  153 bits (77), Expect = 2e-38
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 60

                           
Query: 62 aaccccttttcggtatc 78
          |||||||||||||||||
Sbjct: 61 aaccccttttcggtatc 77




>27167_eca-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>27168_eca-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>27891_mml-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>27892_mml-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>28638_hsa-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>28639_hsa-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>30992_ppy-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>30993_ppy-mir-409:mirbase
          Length = 79

 Score =  141 bits (71), Expect = 8e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>30364_ptr-mir-409:mirbase
          Length = 78

 Score =  139 bits (70), Expect = 3e-34
 Identities = 76/78 (97%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggtg 61
          ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1  ggtactcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggtg 60

                            
Query: 62 aaccccttttcggtatca 79
          ||||||||||||||||||
Sbjct: 61 aaccccttttcggtatca 78




>33361_bta-mir-409a:mirbase
          Length = 79

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 60

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 61 gaaccccttttcggtatca 79




>33362_bta-mir-409b:mirbase
          Length = 79

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Minus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 79 tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 20

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 19 gaaccccttttcggtatca 1




>33836_oar-mir-409:mirbase
          Length = 101

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9  tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 69 gaaccccttttcggtatca 87




>33837_oar-mir-409:mirbase
          Length = 101

 Score =  133 bits (67), Expect = 2e-32
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtactcggagagaggttacccgagcaactttgcatctggaggacgaatgttgctcggt 60
          |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9  tggtacgcggggagaggttacccgagcaactttgcatctggacgacgaatgttgctcggt 68

                             
Query: 61 gaaccccttttcggtatca 79
          |||||||||||||||||||
Sbjct: 69 gaaccccttttcggtatca 87




>26836_cfa-mir-409:mirbase
          Length = 54

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                
Query: 15 aggttacccgagcaactttgcatctggaggacgaatgttgctcggtgaacccct 68
          |||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1  aggttacccgagcaactttgcatctggacgacgaatgttgctcgttgaacccct 54