miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32067_mmu-mir-423:mirbase
          Length = 109

 Score =  216 bits (109), Expect = 3e-57
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtgaggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acttgtgaggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttc 60

                                                            
Query: 61  caaaagctcggtctgaggcccctcagtcttgcttcctaccccgcgcttg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaaagctcggtctgaggcccctcagtcttgcttcctaccccgcgcttg 109




>27898_mml-mir-423:mirbase
          Length = 94

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaccccgcgc 94




>27899_mml-mir-423:mirbase
          Length = 94

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaccccgcgc 94




>33367_bta-mir-423:mirbase
          Length = 94

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaccccgcgc 94




>33368_bta-mir-423:mirbase
          Length = 94

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaccccgcgc 94




>30370_ptr-mir-423:mirbase
          Length = 93

 Score =  184 bits (93), Expect = 9e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                            
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcg 105
           |||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaccccgcg 93




>28645_hsa-mir-423:mirbase
          Length = 94

 Score =  178 bits (90), Expect = 5e-46
 Identities = 93/94 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           |||||||||||||||||||||||||| |||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaacccgcgc 94




>28646_hsa-mir-423:mirbase
          Length = 94

 Score =  178 bits (90), Expect = 5e-46
 Identities = 93/94 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60

                                             
Query: 73  ctgaggcccctcagtcttgcttcctaccccgcgc 106
           |||||||||||||||||||||||||| |||||||
Sbjct: 61  ctgaggcccctcagtcttgcttcctaacccgcgc 94




>30999_ppy-mir-423:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 17  aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 60

                                         
Query: 77  ggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||
Sbjct: 61  ggcccctcagtcttgcttcctaccccgcgc 90




>31000_ppy-mir-423:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 17  aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 60

                                         
Query: 77  ggcccctcagtcttgcttcctaccccgcgc 106
           ||||||||||||||||||||||||||||||
Sbjct: 61  ggcccctcagtcttgcttcctaccccgcgc 90




>34089_ssc-mir-423:mirbase
          Length = 80

 Score =  159 bits (80), Expect = 5e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 20 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 79
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 60

                              
Query: 80 ccctcagtcttgcttcctac 99
          ||||||||||||||||||||
Sbjct: 61 ccctcagtcttgcttcctac 80




>34090_ssc-mir-423:mirbase
          Length = 80

 Score =  159 bits (80), Expect = 5e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 20 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 79
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 60

                              
Query: 80 ccctcagtcttgcttcctac 99
          ||||||||||||||||||||
Sbjct: 61 ccctcagtcttgcttcctac 80




>32908_rno-mir-423:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 2e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 19 gaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgagg 78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgagg 60

                             
Query: 79 cccctcagtcttgcttcct 97
          |||||||||||||||||||
Sbjct: 61 cccctcagtcttgcttcct 79




>29349_hsa-mir-3184:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 5e-37
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                      
Query: 20 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 79
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 16

                         
Query: 80 ccctcagtcttgctt 94
          |||||||||||||||
Sbjct: 15 ccctcagtcttgctt 1




>27173_eca-mir-423:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 7e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 25 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 84
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 60

             
Query: 85 agt 87
          |||
Sbjct: 61 agt 63




>27174_eca-mir-423:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 7e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 25 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 84
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 60

             
Query: 85 agt 87
          |||
Sbjct: 61 agt 63




>26840_cfa-mir-423a:mirbase
          Length = 59

 Score =  117 bits (59), Expect = 2e-27
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                     
Query: 29 tgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctcagt 87
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctcagt 59