miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32915_rno-mir-449a:mirbase
Length = 91
Score = 125 bits (63), Expect = 6e-30
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 ctgtgtgcgatgggttggcagtgtattgttagctggttgagtatgtaaaaggcaccagct 60
Query: 61 aacatgcgactgctctcctattgcaca 87
||||||| |||||||||||||||||||
Sbjct: 61 aacatgcaactgctctcctattgcaca 87
>33377_bta-mir-449a:mirbase
Length = 88
Score = 99.6 bits (50), Expect = 3e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 4 tgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaac 63
|||||||||| |||||||||||||||||||||||||| |||||||| | || ||||||||
Sbjct: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
Query: 64 atgcgactgctctcctattgca 85
|||| |||||| || |||||||
Sbjct: 61 atgcaactgctatcttattgca 82
>26847_cfa-mir-449:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 3 gtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaa 62
||||||||||| |||||||||||||||||||||||||| ||| ||| |||| |||||||
Sbjct: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
Query: 63 catgcgactgctctcctattgca 85
||||| |||||| || |||||||
Sbjct: 63 catgcaactgctatcttattgca 85
>27907_mml-mir-449a:mirbase
Length = 91
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
|||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcagct 60
Query: 61 aacatgcgactgctctcctattgca 85
||||||| |||||| || |||||||
Sbjct: 61 aacatgcaactgctgtcttattgca 85
>28654_hsa-mir-449a:mirbase
Length = 91
Score = 81.8 bits (41), Expect = 8e-17
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
|||||||||||| ||||||||||||||||||||||||| ||||||| |||| | |||
Sbjct: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
Query: 61 aacatgcgactgctctcctattgca 85
||||||| |||||| || |||||||
Sbjct: 61 aacatgcaactgctgtcttattgca 85
>31008_ppy-mir-449a:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
|||||||||||| ||||||||||||||||||||||||| ||||||| |||| | |||
Sbjct: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
Query: 61 aacatgcgactgctctcctattgca 85
||| ||| |||||| || |||||||
Sbjct: 61 aacgtgcaactgctgtcttattgca 85
>30377_ptr-mir-449a:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 tgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagcta 61
||||||||||| ||||||||||||||||||| ||||| ||||||| |||| | ||||
Sbjct: 1 tgtgtgtgatgagctggcagtgtattgttagctcgttgaatatgtgaatggcatcggcta 60
Query: 62 acatgcgactgctctcctattgca 85
|||||| |||||| || |||||||
Sbjct: 61 acatgcaactgctgtcttattgca 84
>27451_mdo-mir-449:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 2e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaacat 65
|||||||| ||||||||||||||||||||||||| ||| ||| | | |||||||||||
Sbjct: 1 tgtgatgggatggcagtgtattgttagctggttgactatctgaac-gtgccagctaacat 59
Query: 66 gcgactgctctcctattgca 85
|| |||||| ||| ||||||
Sbjct: 60 gcaactgctatcccattgca 79
>27181_eca-mir-449a:mirbase
Length = 60
Score = 61.9 bits (31), Expect = 7e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 16 tggcagtgtattgttagctggttgagtatgtgagcggcaccagctaacatgcgactgct 74
||||||||||||||||||||||||| ||| ||| |||| ||||||||| || ||||||
Sbjct: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgct 59
>31553_oan-mir-449a:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 7e-05
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
||||||| ||| | |||||||||| ||||||||||||||| ||| | | ||||||||||
Sbjct: 14 ctgtgtgcgatagtttggcagtgt-ttgttagctggttgaatatttaaatggcaccagct 72
Query: 61 aacatgcgactgctctcctattgca 85
||| | ||||| ||||||||||
Sbjct: 73 gacagacagctgctttcctattgca 97
>27908_mml-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28655_hsa-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>30378_ptr-mir-449b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 16 ggcagtgtattgttagctgg 35
>31009_ppy-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>33378_bta-mir-449b:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
