miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tgcgtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcgtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctact 60
Query: 61 gccctaagtgctccttctggcataagaagttatgtc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccctaagtgctccttctggcataagaagttatgtc 96
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 64 ctaagtgctccttctggcataagaagttatgt 95
||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtgctccttctggcataagaagttatgt 92
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 64 ctaagtgctccttctggcataagaagttatgt 95
||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtgctccttctggcataagaagttatgt 92
>25899_gga-mir-18a:mirbase
Length = 93
Score = 168 bits (85), Expect = 5e-43
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 64 ctaagtgctccttctggcataagaagttatgtc 96
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtgctccttctggcataagaagttatgtc 93
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 4 gtgctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcc 63
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgctttttgtcctaaggtgcatctagtgcagatagtgaagtagattagcatctactgcc 60
Query: 64 ctaagtgctccttctggcataagaagt 90
|||||||||||||||||||||| ||||
Sbjct: 61 ctaagtgctccttctggcataaaaagt 87
>27337_mdo-mir-18:mirbase
Length = 72
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 11 ttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtg 70
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 60
Query: 71 ctccttctggca 82
||||||||||||
Sbjct: 61 ctccttctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 tgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgc 71
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgc 60
Query: 72 tccttctggca 82
|||||||||||
Sbjct: 61 tccttctggca 71
>34211_dre-mir-18a:mirbase
Length = 83
Score = 129 bits (65), Expect = 4e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 10 tttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagt 69
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
Query: 70 gctccttctggca 82
|||||||||||||
Sbjct: 64 gctccttctggca 76
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 127 bits (64), Expect = 2e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 7 ctttttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgcccta 66
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ctttttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgcccta 60
Query: 67 agtgctccttct 78
||||||||||||
Sbjct: 61 agtgctccttct 72
>34550_fru-mir-18:mirbase
Length = 76
Score = 127 bits (64), Expect = 2e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 11 ttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtg 70
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 71 ctccttctggcataag 86
||||||||||||||||
Sbjct: 61 ctccttctggcataag 76
>34698_tni-mir-18:mirbase
Length = 76
Score = 127 bits (64), Expect = 2e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 11 ttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtg 70
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 71 ctccttctggcataag 86
||||||||||||||||
Sbjct: 61 ctccttctggcataag 76
>26950_eca-mir-18a:mirbase
Length = 61
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 77 c 77
|
Sbjct: 61 c 61
>34212_dre-mir-18b:mirbase
Length = 87
Score = 109 bits (55), Expect = 4e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcct 75
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
Query: 76 tctggcataag 86
|||||||||||
Sbjct: 72 tctggcataag 82
>31432_oan-mir-18:mirbase
Length = 130
Score = 91.7 bits (46), Expect = 9e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 77 ctggca 82
||||||
Sbjct: 89 ctggca 94
>25900_gga-mir-18b:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 77 ctggca 82
||||||
Sbjct: 75 ctggca 80
>25656_xla-mir-18:mirbase
Length = 79
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
Query: 77 ctggca 82
|||||
Sbjct: 69 ttggca 74
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
Query: 77 ctggca 82
|||||
Sbjct: 69 ttggca 74
>27657_mml-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 77 ctggca 82
||||||
Sbjct: 66 ctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 77 ctggca 82
||||||
Sbjct: 66 ctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 77 ctggca 82
||||||
Sbjct: 66 ctggca 71
>33135_bta-mir-18b:mirbase
Length = 75
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 77 ctggca 82
||||||
Sbjct: 68 ctggca 73
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 70
Query: 77 ctggca 82
||||||
Sbjct: 71 ctggca 76
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 5e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| || |
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgccccat 65
Query: 77 ctggc 81
|||||
Sbjct: 66 ctggc 70
>26951_eca-mir-18b:mirbase
Length = 59
Score = 61.9 bits (31), Expect = 8e-11
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaa 67
||||||||||||||||||| |||||||| || ||| ||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 51
>34213_dre-mir-18c:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgc 62
||||||||||||| ||| || ||||||||||| |||| |||||||||
Sbjct: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25433_pma-mir-18a:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 ttgttctaaggtgcatctagtgcagatagt 40
|||| |||||||||||||||||||||||||
Sbjct: 12 ttgtgctaaggtgcatctagtgcagatagt 41
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||||| |||||||| | ||| | |||||||||||| ||| ||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
Query: 77 ctggca 82
| ||||
Sbjct: 68 ccggca 73
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
||||||||||||||||| | |||||||| || || |||||||||||||| ||| ||||
Sbjct: 11 taaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatgcccctt 70
Query: 77 ct 78
||
Sbjct: 71 ct 72
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 taaggtgcatctagtgcagatagtgaagtag 47
||||||||||||||||||| |||||| ||||
Sbjct: 101 taaggtgcatctagtgcagttagtgatgtag 131
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 aaggtgcatctagtgcagatagtg 41
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
