miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32670_rno-mir-20b:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
Query: 61 cttctggtactc 72
||||||||||||
Sbjct: 61 cttctggtactc 72
>31786_mmu-mir-20b:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gtagtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagca 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 5 gtagtgccaaagtgctcatagtgcaggtagtttttataccactctactgcagtgtgagca 64
Query: 61 cttctggtactc 72
||||| ||||||
Sbjct: 65 cttctagtactc 76
>26956_eca-mir-20b:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||||||||||||||| ||| || ||||||||| |||||| |||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagttttggcattactctactgtagtgtgggcacttc 62
>27662_mml-mir-20b:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||||||||||||||| ||| || ||||||||| |||||| |||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtgtgggcacttc 62
>33140_bta-mir-20b:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||| ||||||||||| ||| || || |||||||| |||||| |||||||
Sbjct: 5 ccaaagtgctcacagtgcaggtagttttggcagcgctctactgtagtgtgggcacttc 62
>28371_hsa-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||||||||||||||| ||| || ||||||||| ||| || |||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcacttc 62
>30158_ptr-mir-20b:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||||||||||||||| ||| || ||||||||| ||| || |||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcacttc 62
>30763_ppy-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 64
|||||||||||||||||||||||| ||| || ||||||||| ||| || |||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcacttc 62
>31437_oan-mir-20b:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtaggtttt 35
|||||||||||||||||||||||| ||||
Sbjct: 23 ccaaagtgctcatagtgcaggtagttttt 51
>34218_dre-mir-20a:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 agtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcact 62
||||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 46 agtgctaaagtgcttatagtgcaggtagtattt-ctgtcatctactgcagtgtgagcact 104
Query: 63 t 63
|
Sbjct: 105 t 105
>34553_fru-mir-20:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 43 tctactgcagtgtgagcacttctggtact 71
||||||||||||||||||||||| |||||
Sbjct: 42 tctactgcagtgtgagcacttctagtact 70
>25658_xla-mir-20:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
||||||||||||||||||||||||
Sbjct: 7 ccaaagtgctcatagtgcaggtag 30
>25711_xtr-mir-20b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
||||||||||||||||||||||||
Sbjct: 7 ccaaagtgctcatagtgcaggtag 30
>25438_pma-mir-20a:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 gtgccaaagtgctcatagtgcaggtag 30
||||||||||||| |||||||||||||
Sbjct: 12 gtgccaaagtgcttatagtgcaggtag 38
>25904_gga-mir-20b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 11 caaagtgctcatagtgcaggtag 33
>26410_tgu-mir-20b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 11 caaagtgctcatagtgcaggtag 33
>25439_pma-mir-20b:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 gccaaagtgctcatagtgcaggtagg 31
||||||||||| ||||||||||||||
Sbjct: 16 gccaaagtgctgatagtgcaggtagg 41
>34701_tni-mir-20:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 43 tctactgcagtgtgagcacttctggtact 71
||||||||||| ||||||||||| |||||
Sbjct: 42 tctactgcagtatgagcacttctagtact 70
>25710_xtr-mir-20a:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 4 gtgccaaagtgctcatagtgcaggtaggtttt 35
|||| |||||||| ||||||||||||| ||||
Sbjct: 10 gtgctaaagtgcttatagtgcaggtagttttt 41
>26634_cfa-mir-20b:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
|||||||||||| |||||||||||
Sbjct: 4 ccaaagtgctcacagtgcaggtag 27
>27369_mdo-mir-106:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtaggt 32
|||||||| |||||||||||||||
Sbjct: 8 aaagtgcttatagtgcaggtaggt 31
>34219_dre-mir-20b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
|||||||||||| |||||||||||
Sbjct: 19 ccaaagtgctcacagtgcaggtag 42
