miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>31788_mmu-mir-22:mirbase
          Length = 95

 Score =  180 bits (91), Expect = 1e-46
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  acctggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acctggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagc 60

                                             
Query: 61 tgccagttgaagaactgttgccctctgccactggc 95
          ||||||||||||||||||||||||||||| |||||
Sbjct: 61 tgccagttgaagaactgttgccctctgcccctggc 95




>26958_eca-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>27489_age-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>27549_lla-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>27664_mml-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>28181_mne-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>28373_hsa-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>30053_ppa-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>30160_ptr-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>30765_ppy-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>31402_lca-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>33142_bta-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>33143_bta-mir-22:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>27597_sla-mir-22:mirbase
          Length = 85

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 64
          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  ggctgagccgcagtagttcttcagtggcaagctttatgtcctgaccccgctaaagctgcc 60

                                   
Query: 65 agttgaagaactgttgccctctgcc 89
          |||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85




>33790_bta-mir-3600:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 1e-40
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                      
Query: 7  ctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccag 66
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccag 22

                               
Query: 67 ttgaagaactgttgccctctg 87
          |||||||||||||||||||||
Sbjct: 21 ttgaagaactgttgccctctg 1




>33924_ssc-mir-22:mirbase
          Length = 80

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 60

                              
Query: 69 gaagaactgttgccctctgc 88
          ||||||||||||||||||||
Sbjct: 61 gaagaactgttgccctctgc 80




>33925_ssc-mir-22:mirbase
          Length = 80

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 60

                              
Query: 69 gaagaactgttgccctctgc 88
          ||||||||||||||||||||
Sbjct: 61 gaagaactgttgccctctgc 80




>26636_cfa-mir-22:mirbase
          Length = 60

 Score =  119 bits (60), Expect = 4e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 19 agttcttcagtggcaagctttatgtcctgacccagctaaagctgccagttgaagaactgt 78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agttcttcagtggcaagctttatgtcctgacccagctaaagctgccagttgaagaactgt 60




>31439_oan-mir-22:mirbase
          Length = 122

 Score =  117 bits (59), Expect = 1e-27
 Identities = 74/79 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  cctggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagct 61
          |||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 19 cctggctgagtcacagcagttcttcagtggcaagctttacgtcctgtcccagctaaagct 78

                             
Query: 62 gccagttgaagaactgttg 80
          |||||||||||||||||||
Sbjct: 79 gccagttgaagaactgttg 97




>27342_mdo-mir-22:mirbase
          Length = 81

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  gagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgccagtt 68
          ||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 3  gagccacagcagttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagtt 62

                   
Query: 69 gaagaactg 77
          |||||||||
Sbjct: 63 gaagaactg 71




>25906_gga-mir-22:mirbase
          Length = 100

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 14 gcagtagttcttcagtggcaagctttatgtcctgacc---cagctaaagctgccagttga 70
          |||| ||||||||||||||||||||||||||||   |    |||||||||||||||||||
Sbjct: 16 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 75

                    
Query: 71 agaactgttg 80
          ||||||||||
Sbjct: 76 agaactgttg 85




>34222_dre-mir-22a:mirbase
          Length = 86

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 62/70 (88%), Gaps = 3/70 (4%)
 Strand = Plus / Plus

                                                                      
Query: 14 gcagtagttcttcagtggcaagctttatgtcct---gacccagctaaagctgccagttga 70
          |||| ||||||||| ||||||||||||||||||   |  ||||||||||||||||| |||
Sbjct: 9  gcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctga 68

                    
Query: 71 agaactgttg 80
          ||||||||||
Sbjct: 69 agaactgttg 78




>34556_fru-mir-22b:mirbase
          Length = 86

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 62/69 (89%), Gaps = 3/69 (4%)
 Strand = Plus / Plus

                                                                      
Query: 15 cagtagttcttcagtggcaagctttatgtcct--gaccca-gctaaagctgccagttgaa 71
          |||| |||||||| |||| |||||||||||||  |||||| |||||||||||||||||||
Sbjct: 10 cagtcgttcttcactggctagctttatgtcctctgacccatgctaaagctgccagttgaa 69

                   
Query: 72 gaactgttg 80
          || ||||||
Sbjct: 70 gagctgttg 78




>34555_fru-mir-22a:mirbase
          Length = 86

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 57/65 (87%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                      
Query: 19 agttcttcagtggcaagctttatgtcct---gacccagctaaagctgccagttgaagaac 75
          ||||||||| ||||||||||||||||||   |   |||||||||||||||| ||||||||
Sbjct: 14 agttcttcactggcaagctttatgtcctcgtgcaacagctaaagctgccagctgaagaac 73

               
Query: 76 tgttg 80
          |||||
Sbjct: 74 tgttg 78




>25712_xtr-mir-22:mirbase
          Length = 92

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/64 (87%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                      
Query: 19 agttcttcagtggcaagctttatgtcctgacccag--ctaaagctgccagttgaagaact 76
          |||||||||||||||||||||||||  |  | | |  |||||||||||||||||||||||
Sbjct: 17 agttcttcagtggcaagctttatgttgttcctctgtgctaaagctgccagttgaagaact 76

              
Query: 77 gttg 80
          ||||
Sbjct: 77 gttg 80




>34704_tni-mir-22b:mirbase
          Length = 87

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 61/70 (87%), Gaps = 4/70 (5%)
 Strand = Plus / Plus

                                                                      
Query: 15 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 70
          |||| |||||||| |||| |||||||||||||  |||||   ||||||||||||||||||
Sbjct: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69

                    
Query: 71 agaactgttg 80
          ||| ||||||
Sbjct: 70 agagctgttg 79




>34703_tni-mir-22a:mirbase
          Length = 86

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 56/65 (86%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                      
Query: 19 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 75
          ||||||||| |||||||||||||||||   ||   | |||||||||||||| ||||||||
Sbjct: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73

               
Query: 76 tgttg 80
          |||||
Sbjct: 74 tgttg 78




>34223_dre-mir-22b:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 taaagctgccagttgaagaactgttg 80
          ||||||||||||||||||| ||||||
Sbjct: 49 taaagctgccagttgaagagctgttg 74




>25441_pma-mir-22b:mirbase
          Length = 81

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 ctaaagctgccagttgaaga 73
          ||||||||||||||||||||
Sbjct: 50 ctaaagctgccagttgaaga 69