miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 61 aacaggag 68
||||||||
Sbjct: 16 aacaggag 9
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 61 aacaggag 68
||||||||
Sbjct: 16 aacaggag 9
>33024_rno-mir-3074:mirbase
Length = 117
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 30
Query: 61 aacaggag 68
||||||||
Sbjct: 29 aacaggag 22
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 61 aacaggag 68
||||||||
Sbjct: 14 aacaggag 7
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 61 aacaggag 68
||||||||
Sbjct: 14 aacaggag 7
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 68
Query: 61 aacaggag 68
||||||||
Sbjct: 69 aacaggag 76
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 2 tccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagga 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 60
Query: 62 acaggag 68
|||||||
Sbjct: 61 acaggag 67
>26413_tgu-mir-24:mirbase
Length = 132
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 58 ctccggtgcctactgagctgatatcagttctgattttacacactggctcagttcagcagg 117
Query: 61 aacaggag 68
||||||||
Sbjct: 118 aacaggag 125
>25908_gga-mir-24:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
Query: 61 aacaggag 68
||||||||
Sbjct: 61 aacaggag 68
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 5 ggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaaca 64
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaaca 60
Query: 65 gg 66
||
Sbjct: 61 gg 62
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 65
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 66 gag 68
|||
Sbjct: 65 gag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 65
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 66 gag 68
|||
Sbjct: 65 gag 67
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 2e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 5 ggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagga 61
||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>31442_oan-mir-24:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 9e-19
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
|||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 10 ctccagtgcctactgagctgatatcagttctc-gttgacccactggctcagttcagcagg 68
Query: 61 aacaggag 68
||||||||
Sbjct: 69 aacaggag 76
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 cacactggctcagttcagcaggaacagga 67
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 cacactggctcagttcagcaggaacagga 67
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
Query: 61 aacaggag 68
||||||||
Sbjct: 66 aacaggag 73
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggag 104
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 cactggctcagttcagcaggaacaggag 68
||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggag 85
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 41 cactggctcagttcagcaggaacaggag 68
||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggag 9
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 41 cactggctcagttcagcaggaacaggag 68
||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggag 9
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 cactggctcagttcagcaggaacaggag 68
||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggag 85
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 cacactggctcagttcagcaggaacagg 66
||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagg 72
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 cactggctcagttcagcaggaacaggag 68
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggag 70
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 acactggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacaggag 68
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>25444_pma-mir-24:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 cactggctcagttcagcaggaacag 65
|||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 actggctcagttcagcaggaacagg 66
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcaggaacagg 66
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcagga 61
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 ctggctcagttcagcagga 61
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
