miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>31797_mmu-mir-27a:mirbase
          Length = 87

 Score =  157 bits (79), Expect = 2e-39
 Identities = 85/87 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
          ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  tggcctgaggagcagggcttagctgcttgtgagcaaggtccacagcaaagtcgtgttcac 60

                                     
Query: 61 agtggctaagttccgccccctggaccc 87
          |||||||||||||||||||||||||||
Sbjct: 61 agtggctaagttccgccccctggaccc 87




>33931_ssc-mir-27a:mirbase
          Length = 82

 Score =  119 bits (60), Expect = 3e-28
 Identities = 80/84 (95%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
          ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 1  tggcctggggagcagggcttagctgcttgtgagca-ggtccacagcaa-gtcgtgttcac 58

                                  
Query: 61 agtggctaagttccgccccctgga 84
          ||||||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccctgga 82




>27673_mml-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>28187_mne-mir-27a:mirbase
          Length = 79

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>28273_ggo-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>28383_hsa-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>30060_ppa-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>30169_ptr-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>33154_bta-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 75/80 (93%), Gaps = 2/80 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
          ||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 1  tggcctggggagcagggcttagctgcttgtgagc-aggtccacatcaaa-tcgtgttcac 58

                              
Query: 61 agtggctaagttccgccccc 80
          ||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccc 78




>33155_bta-mir-27a:mirbase
          Length = 78

 Score =  103 bits (52), Expect = 2e-23
 Identities = 75/80 (93%), Gaps = 2/80 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
          ||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 1  tggcctggggagcagggcttagctgcttgtgagc-aggtccacatcaaa-tcgtgttcac 58

                              
Query: 61 agtggctaagttccgccccc 80
          ||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccc 78




>30774_ppy-mir-27a:mirbase
          Length = 78

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| ||| || ||||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaa-gttgtgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>31404_lca-mir-27a:mirbase
          Length = 78

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| |||| || |||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaaa-tcatgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>26966_eca-mir-27a:mirbase
          Length = 77

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 66/72 (91%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||| ||| |  |||| |||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggtccaca-ccgagtcatgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>27491_age-mir-27a:mirbase
          Length = 78

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 65/72 (90%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||  ||  | ||||| |||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggttcac-tccaagtcatgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>27599_sla-mir-27a:mirbase
          Length = 78

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 65/72 (90%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
          ||||||||||||||||||||||||||| |||  ||  | ||||| |||||||||||||||
Sbjct: 5  ggagcagggcttagctgcttgtgagcagggttcac-tccaagtcatgttcacagtggcta 63

                      
Query: 69 agttccgccccc 80
          ||||||||||||
Sbjct: 64 agttccgccccc 75




>26645_cfa-mir-27a:mirbase
          Length = 60

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 56/61 (91%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 gggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggctaagttcc 74
          |||||||||||||||||||||  ||| ||| ||| |||||||||||||||||||||||||
Sbjct: 1  gggcttagctgcttgtgagcagagtccacaccaa-gtcgtgttcacagtggctaagttcc 59

           
Query: 75 g 75
          |
Sbjct: 60 g 60




>31444_oan-mir-27a:mirbase
          Length = 85

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 52 cgtgttcacagtggctaagttccgcccc 79
          ||||||||||||||||||||||||||||
Sbjct: 49 cgtgttcacagtggctaagttccgcccc 76




>27351_mdo-mir-27a:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 gtgttcacagtggctaagttccgc 76
          ||||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccgc 76




>25723_xtr-mir-27a:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 tgttcacagtggctaagttccgc 76
          |||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71




>34237_dre-mir-27a:mirbase
          Length = 131

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 tgttcacagtggctaagttccgc 76
          |||||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttccgc 99




>25725_xtr-mir-27c-1:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 54 tgttcacagtggctaagttccgcccc 79
          ||||||||||||||||||||| ||||
Sbjct: 52 tgttcacagtggctaagttccacccc 77




>25726_xtr-mir-27c-2:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 54 tgttcacagtggctaagttccgcccc 79
          ||||||||||||||||||||| ||||
Sbjct: 52 tgttcacagtggctaagttccacccc 77




>25449_pma-mir-27a:mirbase
          Length = 75

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 tgttcacagtggctaagttcc 74
          |||||||||||||||||||||
Sbjct: 48 tgttcacagtggctaagttcc 68




>25450_pma-mir-27b:mirbase
          Length = 75

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 53 gtgttcacagtggctaagttc 73
          |||||||||||||||||||||
Sbjct: 46 gtgttcacagtggctaagttc 66




>25724_xtr-mir-27b:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>25910_gga-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>26416_tgu-mir-27:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>26646_cfa-mir-27b:mirbase
          Length = 63

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 41 tgttcacagtggctaagttc 60




>26967_eca-mir-27b:mirbase
          Length = 73

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66




>27352_mdo-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>27674_mml-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>28384_hsa-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>30170_ptr-mir-27b:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77




>30775_ppy-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>31445_oan-mir-27b:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 70 tgttcacagtggctaagttc 89




>31798_mmu-mir-27b:mirbase
          Length = 73

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66




>32681_rno-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>33156_bta-mir-27b:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78




>33932_ssc-mir-27b:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 50 tgttcacagtggctaagttc 69




>34238_dre-mir-27b:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74




>34240_dre-mir-27d:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74




>34241_dre-mir-27e:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82




>34566_fru-mir-27b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66




>34568_fru-mir-27e:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77




>34713_tni-mir-27b:mirbase
          Length = 74

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66




>34715_tni-mir-27e:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgttcacagtggctaagttc 73
          ||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77