miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tggcctgaggagcagggcttagctgcttgtgagcaaggtccacagcaaagtcgtgttcac 60
Query: 61 agtggctaagttccgccccctggaccc 87
|||||||||||||||||||||||||||
Sbjct: 61 agtggctaagttccgccccctggaccc 87
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 119 bits (60), Expect = 3e-28
Identities = 80/84 (95%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 1 tggcctggggagcagggcttagctgcttgtgagca-ggtccacagcaa-gtcgtgttcac 58
Query: 61 agtggctaagttccgccccctgga 84
||||||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccctgga 82
>27673_mml-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>28187_mne-mir-27a:mirbase
Length = 79
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gtcgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>33154_bta-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 1 tggcctggggagcagggcttagctgcttgtgagc-aggtccacatcaaa-tcgtgttcac 58
Query: 61 agtggctaagttccgccccc 80
||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccc 78
>33155_bta-mir-27a:mirbase
Length = 78
Score = 103 bits (52), Expect = 2e-23
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 tggcctgtggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcac 60
||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 1 tggcctggggagcagggcttagctgcttgtgagc-aggtccacatcaaa-tcgtgttcac 58
Query: 61 agtggctaagttccgccccc 80
||||||||||||||||||||
Sbjct: 59 agtggctaagttccgccccc 78
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 95.6 bits (48), Expect = 5e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| ||| || ||||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaa-gttgtgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>31404_lca-mir-27a:mirbase
Length = 78
Score = 95.6 bits (48), Expect = 5e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| |||| || |||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaaa-tcatgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>26966_eca-mir-27a:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| |||| ||| | |||| |||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggtccaca-ccgagtcatgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>27491_age-mir-27a:mirbase
Length = 78
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| ||| || | ||||| |||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggttcac-tccaagtcatgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>27599_sla-mir-27a:mirbase
Length = 78
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 ggagcagggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggcta 68
||||||||||||||||||||||||||| ||| || | ||||| |||||||||||||||
Sbjct: 5 ggagcagggcttagctgcttgtgagcagggttcac-tccaagtcatgttcacagtggcta 63
Query: 69 agttccgccccc 80
||||||||||||
Sbjct: 64 agttccgccccc 75
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 73.8 bits (37), Expect = 2e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 15 gggcttagctgcttgtgagcaaggtctacagcaaagtcgtgttcacagtggctaagttcc 74
||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||
Sbjct: 1 gggcttagctgcttgtgagcagagtccacaccaa-gtcgtgttcacagtggctaagttcc 59
Query: 75 g 75
|
Sbjct: 60 g 60
>31444_oan-mir-27a:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 cgtgttcacagtggctaagttccgcccc 79
||||||||||||||||||||||||||||
Sbjct: 49 cgtgttcacagtggctaagttccgcccc 76
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 gtgttcacagtggctaagttccgc 76
||||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccgc 76
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttccgc 76
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttccgc 76
|||||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttccgc 99
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttccgcccc 79
||||||||||||||||||||| ||||
Sbjct: 52 tgttcacagtggctaagttccacccc 77
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttccgcccc 79
||||||||||||||||||||| ||||
Sbjct: 52 tgttcacagtggctaagttccacccc 77
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttcc 74
|||||||||||||||||||||
Sbjct: 48 tgttcacagtggctaagttcc 68
>25450_pma-mir-27b:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgttcacagtggctaagttc 73
|||||||||||||||||||||
Sbjct: 46 gtgttcacagtggctaagttc 66
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>25910_gga-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>26416_tgu-mir-27:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 41 tgttcacagtggctaagttc 60
>26967_eca-mir-27b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>27674_mml-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>31445_oan-mir-27b:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 70 tgttcacagtggctaagttc 89
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>32681_rno-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>33156_bta-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 50 tgttcacagtggctaagttc 69
>34238_dre-mir-27b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74
>34240_dre-mir-27d:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
>34566_fru-mir-27b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>34568_fru-mir-27e:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
>34713_tni-mir-27b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>34715_tni-mir-27e:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggctaagttc 73
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
