miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34588_fru-mir-125a:mirbase
Length = 66
Score = 81.8 bits (41), Expect = 9e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 26 gtgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaa 85
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 6 gtgtccctgagacccttaacctgtgatgatatgaaaggtcacaggtgaggtccttgggaa 65
Query: 86 c 86
|
Sbjct: 66 c 66
>34735_tni-mir-125a:mirbase
Length = 63
Score = 81.8 bits (41), Expect = 9e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 26 gtgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaa 85
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 3 gtgtccctgagacccttaacctgtgataacgtgaaaggtcacaggtgaggtccttgggaa 62
Query: 86 c 86
|
Sbjct: 63 c 63
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 69.9 bits (35), Expect = 4e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 27 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaac 86
||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||
Sbjct: 12 tgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcctcaggaac 71
Query: 87 acggctg 93
| |||||
Sbjct: 72 agggctg 78
>27717_mml-mir-125a:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 9 tctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 68
Query: 82 gga 84
|||
Sbjct: 69 gga 71
>27718_mml-mir-125a:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 9 tctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 68
Query: 82 gga 84
|||
Sbjct: 69 gga 71
>32720_rno-mir-125a:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 9 tctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
Query: 82 gga 84
|||
Sbjct: 69 gga 71
>32721_rno-mir-125a:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 9 tctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
Query: 82 gga 84
|||
Sbjct: 69 gga 71
>33201_bta-mir-125a:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 9 tctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
Query: 82 gga 84
|||
Sbjct: 69 gga 71
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 9e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 5 tctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 64
Query: 82 gga 84
|||
Sbjct: 65 gga 67
>27009_eca-mir-125a:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 62
>27010_eca-mir-125a:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 62
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 70
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 62
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 62
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 58.0 bits (29), Expect = 1e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 29 tccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
|||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 57
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 gtccctgagacccttaacctgtga 51
||||||||||||||||||||||||
Sbjct: 1 gtccctgagacccttaacctgtga 24
