miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34529_fru-let-7d:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tgtgctctgcagtgtgaggtagttggttgtatggtttcgcataataaacagcacggagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgctctgcagtgtgaggtagttggttgtatggtttcgcataataaacagcacggagat 60
Query: 61 aactgtacaaccttctagctttccctgcggagtcac 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactgtacaaccttctagctttccctgcggagtcac 96
>34174_dre-let-7d-1:mirbase
Length = 97
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 12 gtgtgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaac 71
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 12 gtgtgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaac 71
Query: 72 cttctagctttccctgcgg 90
|||||||||||||||||||
Sbjct: 72 cttctagctttccctgcgg 90
>34175_dre-let-7d-2:mirbase
Length = 88
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 15 tgaggtagttggttgtatggtttcgcataataaacagcacggagataactgtacaacctt 74
||||||||||||||||||||||| |||| |||| |||| |||| |||||||||||||||
Sbjct: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
Query: 75 ctagctttccctgcgg 90
||||||||||||||||
Sbjct: 71 ctagctttccctgcgg 86
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 53 acggagataactgtacaaccttctagctttccctgcgg 90
||||||||||||||||||||||||||||||||| ||||
Sbjct: 46 acggagataactgtacaaccttctagctttccccgcgg 83
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccctg 87
||||||||||||||||||| |||||||||||||
Sbjct: 48 ggagataactgtacaacctcctagctttccctg 80
>38846_lgi-let-7:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttccctg 87
|||||||||||||||||||||||||||
Sbjct: 65 aactgtacaaccttctagctttccctg 91
>25678_xtr-let-7c:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||||||| ||||||||||
Sbjct: 42 ggagataactgtacaacctcctagctttcc 71
>25872_gga-let-7c:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||||||| ||||||||||
Sbjct: 48 ggagataactgtacaacctcctagctttcc 77
>26380_tgu-let-7c-1:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26381_tgu-let-7c-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>26608_cfa-let-7c:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 38 ggagttaactgtacaaccttctagctttcc 67
>26931_eca-let-7c:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 41 ggagttaactgtacaaccttctagctttcc 70
>27633_mml-let-7c:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>28343_hsa-let-7c:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>30130_ptr-let-7c:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 47 ggagttaactgtacaaccttctagctttcc 76
>30735_ppy-let-7c:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>31755_mmu-let-7c-1:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>32641_rno-let-7c-1:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>33112_bta-let-7c:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 48 ggagttaactgtacaaccttctagctttcc 77
>33900_ssc-let-7c:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 53 ggagttaactgtacaaccttctagctttcc 82
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 60 ggagttaactgtacaaccttctagctttcc 89
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
|||| |||||||||||||||||||||||||
Sbjct: 52 ggagttaactgtacaaccttctagctttcc 81
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccct 86
||||||||||||||| ||| ||||||||||||
Sbjct: 43 ggagataactgtacagcctcctagctttccct 74
>26606_cfa-let-7a-2:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 54 ggagataactgtacagcctcctagctttcc 83
>26929_eca-let-7a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>27319_mdo-let-7a-2:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>28340_hsa-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>30127_ptr-let-7a-2:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>30732_ppy-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>31753_mmu-let-7a-2:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 54 ggagataactgtacagcctcctagctttcc 83
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 54 ggagataactgtacagcctcctagctttcc 83
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 51 ggagataactgtacagcctcctagctttcc 22
>33109_bta-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 42 ggagataactgtacagcctcctagctttcc 71
>33898_ssc-let-7a-1:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 45 ggagataactgtacagcctcctagctttcc 74
>34168_dre-let-7a-4:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttcc 84
||||||||||||||| ||| ||||||||||
Sbjct: 52 ggagataactgtacagcctcctagctttcc 81
>25676_xtr-let-7a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccctg 87
||||||||||||||| ||| ||| |||||||||
Sbjct: 51 ggagataactgtacagcctcctatctttccctg 83
>38718_cte-let-7:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttcc 84
||||||||| ||||||||||||||
Sbjct: 65 aactgtacagccttctagctttcc 88
>24802_cin-let-7d:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tgaggtagttggttgtatggtttc 38
|||||||||||||||||| |||||
Sbjct: 16 tgaggtagttggttgtattgtttc 39
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 gtgaggtagttggttgtatggttt 37
|||||||||| |||||||||||||
Sbjct: 13 gtgaggtagtaggttgtatggttt 36
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 gtgaggtagttggttgtatggttt 37
|||||||||| |||||||||||||
Sbjct: 13 gtgaggtagtaggttgtatggttt 36
>34525_fru-let-7a-1:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 55 ggagataactgtacaaccttctagctttccct 86
|||||| |||||||| ||| ||||||||||||
Sbjct: 43 ggagatgactgtacagcctcctagctttccct 74
