miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 82/84 (97%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtgagtt-cagacagtcacaagtacg 59
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtgagttccagacagtcgcaagtacg 60
Query: 60 tctctacaggaatacatgggcaac 83
||||||||||||||||||||||||
Sbjct: 61 tctctacaggaatacatgggcaac 84
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 gttgtctatatgtaccctgtagaaccgaatttgtgtg 40
>25890_gga-mir-10b:mirbase
Length = 110
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtga 38
||||||||||| ||||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtga 52
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 6 gttgtctatatataccctgtagaaccgaatttgtgtg 42
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>27649_mml-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>28169_mne-mir-10b:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 14 gttgtctatatataccctgtagaaccgaatttgtgtg 50
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 14 gttgtctatatataccctgtagaaccgaatttgtgtg 50
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 gttgtctatatataccctgtagaaccgaatttgtgtg 51
>31424_oan-mir-10b:mirbase
Length = 107
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 13 gttgtctatatataccctgtagaaccgaatttgtgtg 49
>32657_rno-mir-10b:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 14 gttgtctatatataccctgtagaaccgaatttgtgtg 50
>33127_bta-mir-10b:mirbase
Length = 99
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttgtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||| |||||||||||||||||||||||||
Sbjct: 8 gttgtctatatataccctgtagaaccgaatttgtgtg 44
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
|||||||||||||||||||||||||||||||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgtga 38
|||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtga 35
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtgag 39
|||||||||||||||||| |||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtgag 34
>33910_ssc-mir-10b:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
|||||||| |||||||||||||||||||||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtg 34
>25696_xtr-mir-10c:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 7 tatatgtaccctgtagaaccgaatttgtgtgagttc 42
|||||| ||||||||||| |||||||||||||||||
Sbjct: 1 tatatgcaccctgtagaatcgaatttgtgtgagttc 36
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tatgtaccctgtagaaccgaatttgtgtgag 39
||||||||||||||| |||||||||||||||
Sbjct: 18 tatgtaccctgtagatccgaatttgtgtgag 48
>25889_gga-mir-10a:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 atatgtaccctgtagaaccgaatttgtgtga 38
|||| ||||||||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtga 31
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 atatgtaccctgtagaaccgaatttgtgtga 38
|||| ||||||||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtga 31
>34197_dre-mir-10a:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 tctatatgtaccctgtagaaccgaatttgtgtga 38
||||||| ||||||||||| ||||||||||||||
Sbjct: 10 tctatatataccctgtagatccgaatttgtgtga 43
>26944_eca-mir-10b:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgtg 37
|||||||||||||||||||||||||
Sbjct: 5 taccctgtagaaccgaatttgtgtg 29
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgtg 37
|||||||||||||||||||||||||
Sbjct: 5 taccctgtagaaccgaatttgtgtg 29
>34201_dre-mir-10d:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
|||||||| |||||||||||||||||| |||||
Sbjct: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
>34544_fru-mir-10d:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||| |||||||||||||||||| ||||||
Sbjct: 19 gtctataaataccctgtagaaccgaatgtgtgtg 52
>34692_tni-mir-10d:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 gtctatatgtaccctgtagaaccgaatttgtgtg 37
||||||| |||||||||||||||||| ||||||
Sbjct: 19 gtctatacataccctgtagaaccgaatgtgtgtg 52
>38853_lgi-mir-10:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 21 taccctgtagatccgaatttgtgt 44
>26621_cfa-mir-10:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 1 taccctgtagatccgaatttgtgt 24
>26943_eca-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 15 taccctgtagatccgaatttgtgt 38
>27477_age-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27587_sla-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27648_mml-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 21 taccctgtagatccgaatttgtgt 44
>31423_oan-mir-10a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 28 taccctgtagatccgaatttgtgt 51
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>32655_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>32656_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>33126_bta-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtgt 36
||||||||||| ||||||||||||
Sbjct: 9 taccctgtagatccgaatttgtgt 32
>34200_dre-mir-10c:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 tctatatgtaccctgtagaaccgaatttgtgt 36
||||||| ||||||||||| ||| ||||||||
Sbjct: 8 tctatatataccctgtagatccggatttgtgt 39
>34543_fru-mir-10c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 tctatatgtaccctgtagaaccgaatttgtgt 36
||||||| ||||||||||| ||| ||||||||
Sbjct: 7 tctatatctaccctgtagatccggatttgtgt 38
>34691_tni-mir-10c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 tctatatgtaccctgtagaaccgaatttgtgt 36
||||||| ||||||||||| ||| ||||||||
Sbjct: 13 tctatatctaccctgtagatccggatttgtgt 44
>34809_spu-mir-10:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 accctgtagaaccgaatttgtgt 36
|||||||||| ||||||||||||
Sbjct: 27 accctgtagatccgaatttgtgt 49
>34866_sko-mir-10:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taccctgtagaaccgaatttgtg 35
||||||||||| |||||||||||
Sbjct: 20 taccctgtagatccgaatttgtg 42
