miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35338_ame-mir-1-1:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 cgacgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||||
Sbjct: 45 cgacgtatggaatgtaaagaagtatggag 73
>35339_ame-mir-1-2:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 cgacgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||||
Sbjct: 45 cgacgtatggaatgtaaagaagtatggag 73
>37569_ngi-mir-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 gacgtatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||||||
Sbjct: 36 gacgtatggaatgtaaagaagtatggag 63
>37630_nvi-mir-1:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 gacgtatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||||||
Sbjct: 44 gacgtatggaatgtaaagaagtatggag 71
>34995_dpu-mir-1:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 acgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||
Sbjct: 53 acgtatggaatgtaaagaagtatggag 79
>36003_cqu-mir-1:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 acgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||
Sbjct: 44 acgtatggaatgtaaagaagtatggag 70
>37685_tca-mir-1:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 acgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||
Sbjct: 42 acgtatggaatgtaaagaagtatggag 68
>37686_tca-mir-1:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 acgtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||||
Sbjct: 42 acgtatggaatgtaaagaagtatggag 68
>34959_isc-mir-1:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gtatggaatgtaaagaagtatggag 82
|||||||||||||||||||||||||
Sbjct: 53 gtatggaatgtaaagaagtatggag 77
>35166_aae-mir-1:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatggag 69
>35270_aga-mir-1:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatggag 83
>35512_bmo-mir-1a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatggag 74
>35513_bmo-mir-1b:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 32 tatggaatgtaaagaagtatggag 9
>36075_dan-mir-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatggag 75
>36152_der-mir-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatggag 75
>36235_dgr-mir-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatggag 74
>36319_dme-mir-1:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatggag 77
>36320_dme-mir-1:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatggag 77
>36751_dmo-mir-1:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatggag 77
>36824_dpe-mir-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatggag 74
>36899_dps-mir-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatggag 74
>37111_dse-mir-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatggag 75
>37190_dsi-mir-1:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatggag 75
>37327_dvi-mir-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatggag 74
>37402_dwi-mir-1:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 53 tatggaatgtaaagaagtatggag 76
>37480_dya-mir-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatggag 82
||||||||||||||||||||||||
Sbjct: 53 tatggaatgtaaagaagtatggag 76
>38719_cte-mir-1:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gtatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 56 gtatggaatgtaaagaagtatg 77
>24644_bfl-mir-1:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gtatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 53 gtatggaatgtaaagaagtatg 74
>38847_lgi-mir-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatg 74
>38595_ppc-mir-1:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 65 tatggaatgtaaagaagtatg 85
>38486_crm-mir-1:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 53 tatggaatgtaaagaagtatg 73
>24806_cin-mir-1:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 72 tatggaatgtaaagaagtatg 92
>24807_cin-mir-1:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 72 tatggaatgtaaagaagtatg 92
>25346_odi-mir-1c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 64 tatggaatgtaaagaagtatg 84
>25417_pma-mir-1c:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 55 tatggaatgtaaagaagtatg 75
>25684_xtr-mir-1a-1:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>25685_xtr-mir-1a-2:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>25879_gga-mir-1a-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>25880_gga-mir-1a-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>26388_tgu-mir-1-1:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatg 59
>26389_tgu-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatg 59
>26613_cfa-mir-1-1:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 37 tatggaatgtaaagaagtatg 57
>26614_cfa-mir-1-2:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 37 tatggaatgtaaagaagtatg 57
>26936_eca-mir-1:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatg 68
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>27327_mdo-mir-1:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>27641_mml-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>28351_hsa-mir-1-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>30036_ppa-mir-1:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 43 tatggaatgtaaagaagtatg 63
>30138_ptr-mir-1-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>31416_oan-mir-1a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatg 80
>31763_mmu-mir-1a-1:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>31764_mmu-mir-1a-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>31765_mmu-mir-1b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatg 43
>31766_mmu-mir-1b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatg 43
>33119_bta-mir-1-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>33120_bta-mir-1-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatg 71
>33905_ssc-mir-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 62 tatggaatgtaaagaagtatg 82
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatg 80
>34185_dre-mir-1-2:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatg 72
>34535_fru-mir-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>34683_tni-mir-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 55 tatggaatgtaaagaagtatg 75
>34806_spu-mir-1:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 58 tatggaatgtaaagaagtatg 78
>38126_cbr-mir-1:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatg 74
>38266_cel-mir-1:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 59 tatggaatgtaaagaagtatg 79
>25416_pma-mir-1b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tggaatgtaaagaagtatgg 80
||||||||||||||||||||
Sbjct: 54 tggaatgtaaagaagtatgg 73
>25418_pma-mir-1d:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 61 tggaatgtaaagaagtatgg 80
||||||||||||||||||||
Sbjct: 40 tggaatgtaaagaagtatgg 21
>25415_pma-mir-1a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagta 77
|||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagta 69
