miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37646_nvi-mir-71:mirbase
          Length = 102

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tgaaagacatgggtagtgagatgc 24
          ||||||||||||||||||||||||
Sbjct: 26 tgaaagacatgggtagtgagatgc 49



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 40 gtctcactatcttgtctttcatg 62
          ||||||||| |||||||||||||
Sbjct: 65 gtctcactaccttgtctttcatg 87




>38742_cte-mir-71:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagatg 44




>34966_isc-mir-71:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagatg 44




>35006_dpu-mir-71:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagatg 44




>35359_ame-mir-71:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 25 tgaaagacatgggtagtgagatg 47



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 gtctcactatcttgtctttcat 61
          ||||||||||||||||||||||
Sbjct: 63 gtctcactatcttgtctttcat 84




>35532_bmo-mir-71:mirbase
          Length = 119

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 21 tgaaagacatgggtagtgagatg 43




>37726_tca-mir-71:mirbase
          Length = 79

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgagatg 32



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 38 ttgtctcactatcttgtctttcatg 62
          ||||||||||| |||||||||||||
Sbjct: 48 ttgtctcactaccttgtctttcatg 72




>37725_tca-mir-71:mirbase
          Length = 79

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          |||||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgagatg 32



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 38 ttgtctcactatcttgtctttcatg 62
          ||||||||||| |||||||||||||
Sbjct: 48 ttgtctcactaccttgtctttcatg 72




>39089_sme-mir-71c:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgaaagacatgggtagtgagat 22
          ||||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgagat 32




>24665_bfl-mir-71:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgaaagacatgggtagtgagat 22
          ||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagat 43




>34816_spu-mir-71:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tgaaagacatgggtagtgagat 22
          ||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagat 43




>38533_crm-mir-71:mirbase
          Length = 120

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgaaagacatgggtagtgaga 21
          |||||||||||||||||||||
Sbjct: 30 tgaaagacatgggtagtgaga 50




>35185_aae-mir-71:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  gaaagacatgggtagtgagat 22
          |||||||||||||||||||||
Sbjct: 7  gaaagacatgggtagtgagat 27




>36015_cqu-mir-71:mirbase
          Length = 82

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  gaaagacatgggtagtgagat 22
          |||||||||||||||||||||
Sbjct: 7  gaaagacatgggtagtgagat 27




>38105_bma-mir-71:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgaaagacatgggtagtgaga 21
          |||||||||||||||||||||
Sbjct: 21 tgaaagacatgggtagtgaga 41




>38180_cbr-mir-71:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgaaagacatgggtagtgaga 21
          |||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgaga 31




>38307_cel-mir-71:mirbase
          Length = 94

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgaaagacatgggtagtgaga 21
          |||||||||||||||||||||
Sbjct: 16 tgaaagacatgggtagtgaga 36




>38860_lgi-mir-71:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tgaaagacatgggtagtgagatg 23
          ||||||||| |||||||||||||
Sbjct: 22 tgaaagacaagggtagtgagatg 44