miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36188_der-mir-184:mirbase
          Length = 88

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 16 ccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataaggg 75

                 
Query: 59 ctggtat 65
          || ||||
Sbjct: 76 ctcgtat 82




>36393_dme-mir-184:mirbase
          Length = 100

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 22 ccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaactgataaggg 81

                 
Query: 59 ctggtat 65
          || ||||
Sbjct: 82 ctcgtat 88




>36394_dme-mir-184:mirbase
          Length = 100

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 22 ccttatcattctctcgccccgtgtgcacttaaagacaactggacggagaactgataaggg 81

                 
Query: 59 ctggtat 65
          || ||||
Sbjct: 82 ctcgtat 88




>37148_dse-mir-184:mirbase
          Length = 88

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 16 ccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataaggg 75

                 
Query: 59 ctggtat 65
          || ||||
Sbjct: 76 ctcgtat 82




>37224_dsi-mir-184:mirbase
          Length = 88

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/67 (89%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaa-acaactggacggagaactgataaggg 58
          |||||||||||| |||||  ||||||| || || ||||||||||||||||||||||||||
Sbjct: 16 ccttatcattctctcgccccgtgtgcatttaaagacaactggacggagaactgataaggg 75

                 
Query: 59 ctggtat 65
          || ||||
Sbjct: 76 ctcgtat 82




>37516_dya-mir-184:mirbase
          Length = 87

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccttatcattct-tcgccttgtgtgcaatttaaacaactggacggagaactgataagggc 59
          |||||||||||| |||||  ||||||| |  | |||||||||||||||||||||||||||
Sbjct: 16 ccttatcattctctcgccccgtgtgcattgaagacaactggacggagaactgataagggc 75

                
Query: 60 tggtat 65
          | ||||
Sbjct: 76 tcgtat 81




>37747_tca-mir-184:mirbase
          Length = 79

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 27 atttaaacaactggacggagaactgataagggct 60
          |||| |||||||||||||||||||||||||||||
Sbjct: 38 attttaacaactggacggagaactgataagggct 71




>37748_tca-mir-184:mirbase
          Length = 79

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 27 atttaaacaactggacggagaactgataagggct 60
          |||| |||||||||||||||||||||||||||||
Sbjct: 38 attttaacaactggacggagaactgataagggct 71




>36110_dan-mir-184:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 50 acaactggacggagaactgataagggctcgtat 82




>36277_dgr-mir-184:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 50 acaactggacggagaactgataagggctcgtat 82




>36786_dmo-mir-184:mirbase
          Length = 98

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 54 acaactggacggagaactgataagggctcgtat 86




>36862_dpe-mir-184:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 50 acaactggacggagaactgataagggctcgtat 82




>36937_dps-mir-184:mirbase
          Length = 100

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 56 acaactggacggagaactgataagggctcgtat 88




>37362_dvi-mir-184:mirbase
          Length = 98

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 54 acaactggacggagaactgataagggctcgtat 86




>37441_dwi-mir-184:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 33 acaactggacggagaactgataagggctggtat 65
          |||||||||||||||||||||||||||| ||||
Sbjct: 50 acaactggacggagaactgataagggctcgtat 82




>35293_aga-mir-184:mirbase
          Length = 82

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 32 aacaactggacggagaactgataagggc 59
          ||||||||||||||||||||||||||||
Sbjct: 45 aacaactggacggagaactgataagggc 72




>38873_lgi-mir-184:mirbase
          Length = 101

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 30 taaacaactggacggagaactgataagggct 60
          |||| ||||||||||||||||||||||||||
Sbjct: 53 taaagaactggacggagaactgataagggct 83




>38757_cte-mir-184a:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 59 actggacggagaactgataagggc 82




>34829_spu-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 37 ctggacggagaactgataagggct 60
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34885_sko-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 37 ctggacggagaactgataagggct 60
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>34975_isc-mir-184:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 37 ctggacggagaactgataagggct 60
          ||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83




>35196_aae-mir-184:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 53 actggacggagaactgataagggc 76




>35371_ame-mir-184:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77




>35541_bmo-mir-184:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73




>36025_cqu-mir-184:mirbase
          Length = 85

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73




>37581_ngi-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37613_nlo-mir-184:mirbase
          Length = 89

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75




>37653_nvi-mir-184:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 36 actggacggagaactgataagggc 59
          ||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77




>24688_bfl-mir-184:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 37 ctggacggagaactgataagggc 59
          |||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggc 82




>24844_cin-mir-184:mirbase
          Length = 102

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 38 tggacggagaactgataagggct 60
          |||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggct 88




>35066_api-mir-184b:mirbase
          Length = 60

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 17 cttgtgtgcaatttaaacaactggacggagaactgataa 55
          |||||||| | |||| || ||||||||||||||||||||
Sbjct: 18 cttgtgtgaattttatactactggacggagaactgataa 56




>34335_dre-mir-184:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 38 tggacggagaactgataagggc 59
          ||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76




>34336_dre-mir-184-2:mirbase
          Length = 79

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 38 tggacggagaactgataagggc 59
          ||||||||||||||||||||||
Sbjct: 49 tggacggagaactgataagggc 70




>25979_gga-mir-184:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>26487_tgu-mir-184:mirbase
          Length = 112

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 38  tggacggagaactgataaggg 58
           |||||||||||||||||||||
Sbjct: 81  tggacggagaactgataaggg 101




>26739_cfa-mir-184:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 42 tggacggagaactgataaggg 62




>27065_eca-mir-184:mirbase
          Length = 70

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 46 tggacggagaactgataaggg 66




>27408_mdo-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>27775_mml-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28225_mne-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>28491_hsa-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30259_ptr-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>30873_ppy-mir-184:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>31900_mmu-mir-184:mirbase
          Length = 69

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 45 tggacggagaactgataaggg 65




>32770_rno-mir-184:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 47 tggacggagaactgataaggg 67




>33252_bta-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34014_ssc-mir-184:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72




>34616_fru-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>34763_tni-mir-184:mirbase
          Length = 73

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tggacggagaactgataaggg 58
          |||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73




>25809_xtr-mir-184:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 38 tggacggagaactgataagg 57
          ||||||||||||||||||||
Sbjct: 53 tggacggagaactgataagg 72




>38758_cte-mir-184b:mirbase
          Length = 95

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 36 actggacggagaactgata 54
          |||||||||||||||||||
Sbjct: 56 actggacggagaactgata 74