miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37781_tca-mir-281:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 3e-12
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 10 aagagagctatccgtcgacagtatataattta----cactgtcatggagttgctctcttt 65
Query: 61 at 62
||
Sbjct: 66 at 67
>37782_tca-mir-281:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 3e-12
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 10 aagagagctatccgtcgacagtatataattta----cactgtcatggagttgctctcttt 65
Query: 61 at 62
||
Sbjct: 66 at 67
>35557_bmo-mir-281:mirbase
Length = 77
Score = 61.9 bits (31), Expect = 4e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 11 aagagagctatccgtcgacagtattgctgataa--acactgtcatggagttgctctcttt 68
Query: 61 at 62
||
Sbjct: 69 at 70
>35386_ame-mir-281:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 3e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
||||||||||||| |||||||||| || | | |||||||||||||||||||||||||
Sbjct: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
>24703_bfl-mir-281:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
|||||||||||||||||||||||||
Sbjct: 55 acactgtcatggagttgctctcttt 79
>38884_lgi-mir-281:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttta 61
||||||||||||||||||||||||
Sbjct: 59 actgtcatggagttgctctcttta 82
>37566_lmi-mir-281:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttta 61
||||||||||||||||||||||||
Sbjct: 34 actgtcatggagttgctctcttta 57
>35210_aae-mir-281:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagta 23
|||||||||||||||||||||||
Sbjct: 21 aagagagctatccgtcgacagta 43
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctctttat 62
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttat 80
>35305_aga-mir-281:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagta 23
|||||||||||||||||||||||
Sbjct: 20 aagagagctatccgtcgacagta 42
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctctttat 62
|||||||||||| |||||||||||||
Sbjct: 54 cactgtcatggaattgctctctttat 79
>36038_cqu-mir-281:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagta 23
|||||||||||||||||||||||
Sbjct: 26 aagagagctatccgtcgacagta 48
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctctttat 62
|||||||||||| |||||||||||||
Sbjct: 60 cactgtcatggaattgctctctttat 85
>38774_cte-mir-281:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 tgtcatggagttgctctcttta 61
||||||||||||||||||||||
Sbjct: 62 tgtcatggagttgctctcttta 83
>24852_cin-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctctt 59
||||||||||||||||||||||
Sbjct: 64 actgtcatggagttgctctctt 85
>35026_dpu-mir-281:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctctttat 62
||||||||||||| ||||||||||||
Sbjct: 58 cactgtcatggagctgctctctttat 83
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 60 actgtcatggaattgctctcttt 82
>36202_der-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 59 actgtcatggaattgctctcttt 81
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 59 actgtcatggaattgctctcttt 81
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 63 actgtcatggaattgctctcttt 85
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagt 22
||||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>34895_sko-mir-281:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ctgtcatggagttgctctctt 59
|||||||||||||||||||||
Sbjct: 60 ctgtcatggagttgctctctt 80
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
||||||||||||| |||||||||||
Sbjct: 50 acactgtcatggaattgctctcttt 74
>37589_ngi-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
||||||||||||| |||||||||||
Sbjct: 43 acactgtcatggacttgctctcttt 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtat 24
||||||||||||| ||||||||||
Sbjct: 8 aagagagctatccatcgacagtat 31
>37620_nlo-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
||||||||||||| |||||||||||
Sbjct: 43 acactgtcatggacttgctctcttt 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtat 24
||||||||||||| ||||||||||
Sbjct: 8 aagagagctatccatcgacagtat 31
>37663_nvi-mir-281:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
||||||||||||| |||||||||||
Sbjct: 57 acactgtcatggacttgctctcttt 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtat 24
||||||||||||| ||||||||||
Sbjct: 22 aagagagctatccatcgacagtat 45
>25337_csa-mir-281:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 ctgtcatggagttgctctct 58
||||||||||||||||||||
Sbjct: 65 ctgtcatggagttgctctct 84
>25536_pma-mir-281a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 tgtcatggagttgctctctt 59
||||||||||||||||||||
Sbjct: 55 tgtcatggagttgctctctt 74
>36201_der-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37238_dsi-mir-281:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37 cactgtcatggagttgctctcttt 60
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>38122_bma-mir-281:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttta 61
||||||||||| ||||||||||||
Sbjct: 51 actgtcatggaattgctctcttta 74
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctcttt 60
||||||||||| |||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
