miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>35084_api-mir-307-2:mirbase
          Length = 61

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  actcactcaatttggatgtgatgttcaaattggcgccaccacaacctccttgagtgagcg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  actcactcaatttggatgtgatgttcaaattggcgccaccacaacctccttgagtgagcg 60

           
Query: 61 a 61
          |
Sbjct: 61 a 61




>35220_aae-mir-307:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 59 cacaacctccttgagtgagcga 80




>35311_aga-mir-307:mirbase
          Length = 98

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>35564_bmo-mir-307:mirbase
          Length = 96

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 62 cacaacctccttgagtgagcga 83




>36136_dan-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36214_der-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36304_dgr-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36449_dme-mir-307a:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36450_dme-mir-307a:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36451_dme-mir-307b:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 49 cacaacctccttgagtgagcga 28




>36452_dme-mir-307b:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 49 cacaacctccttgagtgagcga 28




>36810_dmo-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36886_dpe-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36968_dps-mir-307a:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>36969_dps-mir-307b:mirbase
          Length = 85

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 30 cacaacctccttgagtgagcga 9




>37174_dse-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>37250_dsi-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>37387_dvi-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>37467_dwi-mir-307:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>37543_dya-mir-307:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 57 cacaacctccttgagtgagcga 78




>37567_lmi-mir-307:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61




>37790_tca-mir-307:mirbase
          Length = 68

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 43 cacaacctccttgagtgagcga 64




>37791_tca-mir-307:mirbase
          Length = 68

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 cacaacctccttgagtgagcga 61
          ||||||||||||||||||||||
Sbjct: 43 cacaacctccttgagtgagcga 64




>34985_isc-mir-307:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 40 cacaacctccttgagtgag 58
          |||||||||||||||||||
Sbjct: 62 cacaacctccttgagtgag 80




>35030_dpu-mir-307:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 40 cacaacctccttgagtgag 58
          |||||||||||||||||||
Sbjct: 62 cacaacctccttgagtgag 80