miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36979_dps-mir-927:mirbase
          Length = 88

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgttttagaattcctacgctttacccgtgattaaagtagtgcggcaaagcgtttggattc 72
          |||||||||||||||||||||||||  ||   || | | | |||||||||||||||||||
Sbjct: 12 tgttttagaattcctacgctttaccgttgcaaaacgaaattcggcaaagcgtttggattc 71

                
Query: 73 tgaaac 78
          ||||||
Sbjct: 72 tgaaac 77




>35571_bmo-mir-927:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/72 (86%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 tttgttttagaattcctacgctttacccgtgattaaagtagtgcggcaaagcgtttggat 70
          |||| ||||||||||||||||||||||  ||    |||||||  ||||||||||||||||
Sbjct: 10 tttgctttagaattcctacgctttaccgttgcc--aagtagttgggcaaagcgtttggat 67

                      
Query: 71 tctgaaacgaaa 82
          ||| ||||||||
Sbjct: 68 tctaaaacgaaa 79




>35585_bmo-mir-1926:mirbase
          Length = 90

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/72 (86%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                      
Query: 11 tttgttttagaattcctacgctttacccgtgattaaagtagtgcggcaaagcgtttggat 70
          |||| ||||||||||||||||||||||  ||    |||||||  ||||||||||||||||
Sbjct: 80 tttgctttagaattcctacgctttaccgttgcc--aagtagttgggcaaagcgtttggat 23

                      
Query: 71 tctgaaacgaaa 82
          ||| ||||||||
Sbjct: 22 tctaaaacgaaa 11




>35398_ame-mir-927:mirbase
          Length = 100

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tttgttttagaattcctacgctttacc 37
          |||||||||||||||||||||||||||
Sbjct: 17 tttgttttagaattcctacgctttacc 43




>37594_ngi-mir-927:mirbase
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tttgttttagaattcctacgctttacc 37
          |||||||||||||||||||||||||||
Sbjct: 17 tttgttttagaattcctacgctttacc 43




>37624_nlo-mir-927:mirbase
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tttgttttagaattcctacgctttacc 37
          |||||||||||||||||||||||||||
Sbjct: 17 tttgttttagaattcctacgctttacc 43




>37671_nvi-mir-927:mirbase
          Length = 102

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tttgttttagaattcctacgctttacc 37
          |||||||||||||||||||||||||||
Sbjct: 17 tttgttttagaattcctacgctttacc 43




>35230_aae-mir-927:mirbase
          Length = 76

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 9  ggtttgttttagaattcctacgctttacc 37
          |||||| ||||||||||||||||||||||
Sbjct: 1  ggtttgctttagaattcctacgctttacc 29



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 55 ggcaaagcgtttggattctgaaacgaaac 83
          |||||||||||||| ||||||||||||||
Sbjct: 48 ggcaaagcgtttgggttctgaaacgaaac 76




>36477_dme-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 cggcaaagcgtttggattctgaaac 78
          |||||||||||||||||||||||||
Sbjct: 53 cggcaaagcgtttggattctgaaac 77




>36478_dme-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 cggcaaagcgtttggattctgaaac 78
          |||||||||||||||||||||||||
Sbjct: 53 cggcaaagcgtttggattctgaaac 77




>37263_dsi-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 cggcaaagcgtttggattctgaaac 78
          |||||||||||||||||||||||||
Sbjct: 54 cggcaaagcgtttggattctgaaac 78




>37807_tca-mir-927:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 55 ggcaaagcgtttggattctgaaacgaa 81
          |||||||||||||||||||||| ||||
Sbjct: 41 ggcaaagcgtttggattctgaatcgaa 67



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttagaattcctacgctttacc 37
          ||||||||||||||||||||||
Sbjct: 7  tttagaattcctacgctttacc 28




>37808_tca-mir-927:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 55 ggcaaagcgtttggattctgaaacgaa 81
          |||||||||||||||||||||| ||||
Sbjct: 41 ggcaaagcgtttggattctgaatcgaa 67



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttagaattcctacgctttacc 37
          ||||||||||||||||||||||
Sbjct: 7  tttagaattcctacgctttacc 28




>35088_api-mir-927:mirbase
          Length = 59

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttagaattcctacgctttacc 37
          ||||||||||||||||||||||
Sbjct: 1  tttagaattcctacgctttacc 22