miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37602_nlo-mir-8:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggagtatctgttcacatcttaccgggcagcattagattgaagttg-accttctaatactg 59
|||||||||||| ||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 1 ggagtatctgtttacatcttaccgggcagcattagattacatttgaattttctaatactg 60
Query: 60 tcaggtaaagatgtcgtcaggattcc 85
||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtcaggattcc 86
>37635_nvi-mir-8:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggagtatctgttcacatcttaccgggcagcattagattgaagttg-accttctaatactg 59
|||||||||||| ||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 1 ggagtatctgtttacatcttaccgggcagcattagattacatttgaattttctaatactg 60
Query: 60 tcaggtaaagatgtcgtcaggattcc 85
||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtcaggattcc 86
>37125_dse-mir-8:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagattgaagttgaccttctaatactgtcaggt 65
|||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactgtcaggt 66
Query: 66 aaagatgtcgtc 77
||||||||||||
Sbjct: 67 aaagatgtcgtc 78
>37695_tca-mir-8:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattgaagttga-ccttctaatactgtcaggta 66
||||| ||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 67 aagatgtc 74
||||||||
Sbjct: 62 aagatgtc 69
>37696_tca-mir-8:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 ctgttcacatcttaccgggcagcattagattgaagttga-ccttctaatactgtcaggta 66
||||| ||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 67 aagatgtc 74
||||||||
Sbjct: 62 aagatgtc 69
>36836_dpe-mir-8:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 67/74 (90%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat--tgaagttgaccttctaatactgtcag 63
|||||||||||||||||||||||||||||||| | || | ||| ||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatcctttagat-acc-tctaatactgtcag 64
Query: 64 gtaaagatgtcgtc 77
||||||||||||||
Sbjct: 65 gtaaagatgtcgtc 78
>36912_dps-mir-8:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 67/74 (90%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat--tgaagttgaccttctaatactgtcag 63
|||||||||||||||||||||||||||||||| | || | ||| ||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatcctttagat-acc-tctaatactgtcag 64
Query: 64 gtaaagatgtcgtc 77
||||||||||||||
Sbjct: 65 gtaaagatgtcgtc 78
>35171_aae-mir-8:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 1e-12
Identities = 66/76 (86%), Gaps = 8/76 (10%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattaga-----ttgaagttgaccttctaatactgtc 61
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatttttgaaat---acttctaatactgtc 58
Query: 62 aggtaaagatgtcgtc 77
||||||||||||||||
Sbjct: 59 aggtaaagatgtcgtc 74
>36006_cqu-mir-8:mirbase
Length = 77
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagattgaagttga--ccttctaatactgtcagg 64
||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61
Query: 65 taaagatgtcgtc 77
|||||||||||||
Sbjct: 62 taaagatgtcgtc 74
>36253_dgr-mir-8:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatt 39
>36763_dmo-mir-8:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 6 atctgttcacatcttaccgggcagcattagatt 38
>37339_dvi-mir-8:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatt 39
>37414_dwi-mir-8:mirbase
Length = 92
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagatt 38
|||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatt 39
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 50 tctaatactgtcaggtaaagatgtcgtc 77
||||||||||||||||||||||||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtcgtc 83
>36087_dan-mir-8:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>36165_der-mir-8:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>36345_dme-mir-8:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>36346_dme-mir-8:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>37203_dsi-mir-8:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>37493_dya-mir-8:mirbase
Length = 87
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 atctgttcacatcttaccgggcagcattagat 37
||||||||||||||||||||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagat 38
>35274_aga-mir-8:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tctgttcacatcttaccgggcagcattagat 37
|||||||||||||||||||||||||||||||
Sbjct: 6 tctgttcacatcttaccgggcagcattagat 36
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatgtcgtc 77
|||||||||||||||||||||||||||||
Sbjct: 51 ttctaatactgtcaggtaaagatgtcgtc 79
>34963_isc-mir-8:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 acatcttaccgggcagcattagattgaagttgaccttctaatactgtcaggtaaagatgt 73
|||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 21 acatcttaccagacagcattagattgagcctgat-ttctaatactgtcaggtaaagatgt 79
Query: 74 c 74
|
Sbjct: 80 c 80
>35518_bmo-mir-8:mirbase
Length = 102
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatgtcgtc 77
|||||||||||||||||||||||||||||
Sbjct: 57 ttctaatactgtcaggtaaagatgtcgtc 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ggagtatctgttcacatcttaccgggcagcattaga 36
|||||| | |||| ||||||||||||||||||||||
Sbjct: 7 ggagtaacggttcgcatcttaccgggcagcattaga 42
>38728_cte-mir-8:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 cttctaatactgtcaggtaaagatgtc 74
|||||||||||||||||||||||||||
Sbjct: 56 cttctaatactgtcaggtaaagatgtc 82
>38851_lgi-mir-8:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatgtc 74
||||||||||||||||||||||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtc 83
>34999_dpu-mir-8:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatgtc 74
||||||||||||||||||||||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtc 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagattg 39
|||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagattg 34
>37561_lmi-mir-8:mirbase
Length = 61
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagattg 39
|||||||||||||||||||||||||
Sbjct: 1 catcttaccgggcagcattagattg 25
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 tctaatactgtcaggtaaagatgtc 74
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
>38969_sja-mir-8:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatg 72
|||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 ttctaatactgtcaggtaaagatg 72
|||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64
>39065_sme-mir-8a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tctaatactgtcaggtaaagatg 72
|||||||||||||||||| ||||
Sbjct: 43 tctaatactgtcaggtaacgatg 65
