miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 117 bits (59), Expect = 2e-27
Identities = 79/85 (92%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 17 cttttgcggtccgatacatcaaattggttgtggaatgtttcgagt---catatcacagcc 73
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 cttttgcggtccgatacatcaaattggttgtggaatgtttcgtctttccatatcacagcc 60
Query: 74 attttgatgagcttggcccgcagaa 98
|||||||||||||||||||| ||||
Sbjct: 61 attttgatgagcttggcccgtagaa 85
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 109 bits (55), Expect = 4e-25
Identities = 78/85 (91%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 17 cttttgcggtccgatacatcaaattggttgtggaatgtttcgagt---catatcacagcc 73
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1 cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 60
Query: 74 attttgatgagcttggcccgcagaa 98
|||||||||||||||||||| ||||
Sbjct: 61 attttgatgagcttggcccgtagaa 85
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 109 bits (55), Expect = 4e-25
Identities = 78/85 (91%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 17 cttttgcggtccgatacatcaaattggttgtggaatgtttcgagt---catatcacagcc 73
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 17 cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 76
Query: 74 attttgatgagcttggcccgcagaa 98
|||||||||||||||||||| ||||
Sbjct: 77 attttgatgagcttggcccgtagaa 101
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 agtcatatcacagccattttgatgag 84
||||||||||||||||||||||||||
Sbjct: 42 agtcatatcacagccattttgatgag 67
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 agtcatatcacagccattttgatgag 84
||||||||||||||||||||||||||
Sbjct: 42 agtcatatcacagccattttgatgag 67
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 agtcatatcacagccattttgatgag 84
||||||||||||||||||||||||||
Sbjct: 42 agtcatatcacagccattttgatgag 67
>36094_dan-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 44 tcatatcacagccattttgatgag 67
>36172_der-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>36359_dme-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>36360_dme-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 44 tcatatcacagccattttgatgag 67
>36919_dps-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 44 tcatatcacagccattttgatgag 67
>37132_dse-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 48 tcatatcacagccattttgatgag 71
>37500_dya-mir-13a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgag 84
||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgatgag 68
>37711_tca-mir-13a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 atatcacagccattttgatgagcttgg 89
|||||||||||| ||||||||||||||
Sbjct: 47 atatcacagccactttgatgagcttgg 73
>37712_tca-mir-13a:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 atatcacagccattttgatgagcttgg 89
|||||||||||| ||||||||||||||
Sbjct: 47 atatcacagccactttgatgagcttgg 73
>35051_api-mir-13a:mirbase
Length = 61
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagc 85
|||||||||||||| ||||||||||
Sbjct: 37 tcatatcacagccactttgatgagc 61
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 41 tcatatcacagccattttgacgagtttgg 69
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 gtcatatcacagccattttga 80
|||||||||||||||||||||
Sbjct: 38 gtcatatcacagccattttga 58
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 41 tcatatcacagccattttgacgagtttgg 69
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 41 tcatatcacagccattttgacgagtttgg 69
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 43 tcatatcacagccattttgacgagtttgg 71
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttgatgagcttgg 89
|||||||||||||||||||| ||| ||||
Sbjct: 40 tcatatcacagccattttgacgagtttgg 68
>35180_aae-mir-13:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 51 tcatatcacagccattttga 70
>35281_aga-mir-13b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 53 tcatatcacagccattttga 72
>36011_cqu-mir-13:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 52 tcatatcacagccattttga 71
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttga 65
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttga 62
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttga 62
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttga 59
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttga 61
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttga 65
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tcatatcacagccattttga 80
||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttga 60
