miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37640_nvi-mir-13b:mirbase
          Length = 92

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 72/79 (91%), Gaps = 5/79 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatccaatcgtcaaattggttgtggcgtgttgcttttctaga-tttcatatcacagcc 59
          ||||||| ||||||||||||||||||||||||||    |||||| |||||||||||||||
Sbjct: 6  gcgatccgatcgtcaaattggttgtggcgtgttg----tctagattttcatatcacagcc 61

                             
Query: 60 atttttgacgatttggatc 78
          ||||||||||| |||||||
Sbjct: 62 atttttgacgagttggatc 80




>35527_bmo-mir-13b:mirbase
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 47 tcatatcacagccatttttgacgatttgg 75
          |||||||||||||||||||||||| ||||
Sbjct: 45 tcatatcacagccatttttgacgagttgg 73




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 50 ttcatatcacagccatttt 68




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 52 ttcatatcacagccatttt 70




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 51 ttcatatcacagccatttt 69




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 40 ttcatatcacagccatttt 58




>36262_dgr-mir-13b-2:mirbase
          Length = 73

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 45 ttcatatcacagccatttt 63




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 42 ttcatatcacagccatttt 60




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 42 ttcatatcacagccatttt 60




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 40 ttcatatcacagccatttt 58




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 40 ttcatatcacagccatttt 58




>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 45 ttcatatcacagccatttt 63




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 42 ttcatatcacagccatttt 60




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 40 ttcatatcacagccatttt 58




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 ttcatatcacagccatttt 64
          |||||||||||||||||||
Sbjct: 40 ttcatatcacagccatttt 58