miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37575_ngi-mir-31a:mirbase
Length = 72
Score = 89.7 bits (45), Expect = 4e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 25 gaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgtcacatccagcc 84
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct: 1 gaaggcaagatgtcggcatagctgatgc-ttttgaaatttcggctgtgtcacatccagcc 59
Query: 85 aaccgaacgctca 97
| || ||||||||
Sbjct: 60 agccaaacgctca 72
>37607_nlo-mir-31a:mirbase
Length = 72
Score = 89.7 bits (45), Expect = 4e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 25 gaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgtcacatccagcc 84
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct: 1 gaaggcaagatgtcggcatagctgatgc-ttttgaaatttcggctgtgtcacatccagcc 59
Query: 85 aaccgaacgctca 97
| || ||||||||
Sbjct: 60 agccaaacgctca 72
>37643_nvi-mir-31a:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 4e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 25 gaaggcaagatgtcggcatagctgatgcgattttaaaattcggctgtgtcacatccagcc 84
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct: 25 gaaggcaagatgtcggcatagctgatgc-ttttgaaatttcggctgtgtcacatccagcc 83
Query: 85 aaccgaacgctca 97
| || ||||||||
Sbjct: 84 agccaaacgctca 96
>35003_dpu-mir-31:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 24 cgaaggcaagatgtcggcatagctga 49
||||||||||||||||||||||||||
Sbjct: 18 cgaaggcaagatgtcggcatagctga 43
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctgat 50
|||||||||||||||||||||||
Sbjct: 16 ggcaagatgtcggcatagctgat 38
>37720_tca-mir-31:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 aggcaagatgtcggcatagctga 49
|||||||||||||||||||||||
Sbjct: 11 aggcaagatgtcggcatagctga 33
>37719_tca-mir-31:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 aggcaagatgtcggcatagctga 49
|||||||||||||||||||||||
Sbjct: 11 aggcaagatgtcggcatagctga 33
>36098_dan-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36176_der-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36264_dgr-mir-31a:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36367_dme-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36368_dme-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36774_dmo-mir-31a:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36847_dpe-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>36923_dps-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>37136_dse-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>37212_dsi-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>37350_dvi-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>37504_dya-mir-31a:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggcaagatgtcggcatagctga 49
||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36
>38622_ppc-mir-72:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 27 aggcaagatgtcggcatagctgatg 51
||||||||||| |||||||||||||
Sbjct: 24 aggcaagatgttggcatagctgatg 48
>38737_cte-mir-31:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 aggcaagatgtcggcatagctgat 50
||||||||||| ||||||||||||
Sbjct: 21 aggcaagatgttggcatagctgat 44
>31456_oan-mir-31:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 gaaggcaagatgtcggcatagctg 48
||||||||||||| ||||||||||
Sbjct: 15 gaaggcaagatgttggcatagctg 38
>35529_bmo-mir-31:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 gaaggcaagatgtcggcatagctg 48
|||||||||| |||||||||||||
Sbjct: 18 gaaggcaagaagtcggcatagctg 41
>38106_bma-mir-72:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 26 aaggcaagatgtcggcatagctga 49
|||||||||||| |||||||||||
Sbjct: 17 aaggcaagatgttggcatagctga 40
