miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37644_nvi-mir-33:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 31 gtgcattgtagttgcattgcatgaa 55
          |||||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatgaa 55




>38738_cte-mir-33:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcatg 43




>24657_bfl-mir-33-1:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 7  gtgcattgtagttgcattgcatg 29




>24658_bfl-mir-33-2:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgcatg 38




>25740_xtr-mir-33a:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>25924_gga-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>26431_tgu-mir-33:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgcatg 33




>26661_cfa-mir-33:mirbase
          Length = 61

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 1  gtgcattgtagttgcattgcatg 23




>26982_eca-mir-33a:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>27689_mml-mir-33a:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>28196_mne-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>28284_ggo-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>28399_hsa-mir-33a:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>30071_ppa-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>30185_ptr-mir-33a:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>30789_ppy-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>31458_oan-mir-33a:mirbase
          Length = 97

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatg 44




>31459_oan-mir-33a:mirbase
          Length = 97

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatg 44




>31814_mmu-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>32696_rno-mir-33:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>33173_bta-mir-33a:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcatg 28




>37721_tca-mir-33:mirbase
          Length = 102

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatg 47




>37722_tca-mir-33:mirbase
          Length = 102

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgcattgtagttgcattgcatg 53
          |||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatg 47




>38857_lgi-mir-33:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 31 gtgcattgtagttgcattgcat 52
          ||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcat 42




>24815_cin-mir-33:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgtgcattgtagttgcattgca 51
          ||||||||||||||||||||||
Sbjct: 15 tgtgcattgtagttgcattgca 36




>35004_dpu-mir-33:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgtgcattgtagttgcattgca 51
          ||||||||||||||||||||||
Sbjct: 20 tgtgcattgtagttgcattgca 41




>27359_mdo-mir-33:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 2  gtgcattgtagttgcattgca 22




>31460_oan-mir-33b:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 14 gtgcattgtagttgcattgca 34




>31461_oan-mir-33b:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 14 gtgcattgtagttgcattgca 34




>35183_aae-mir-33:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 9  gtgcattgtagttgcattgca 29




>35530_bmo-mir-33:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgca 31




>36014_cqu-mir-33:mirbase
          Length = 76

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 gtgcattgtagttgcattgca 51
          |||||||||||||||||||||
Sbjct: 3  gtgcattgtagttgcattgca 23