miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37646_nvi-mir-71:mirbase
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 16 gattccgtctgaaagacatgggtagtgagatg-ttctcacgctatcgcgtctcactatct 74
||||||| ||||||||||||||||||||||| || | || ||||||||||||| ||
Sbjct: 17 gattccgcttgaaagacatgggtagtgagatgcttacctcggattcgcgtctcactacct 76
Query: 75 tgtctttcatccggcg 90
|||||||||| |||||
Sbjct: 77 tgtctttcatgcggcg 92
>35006_dpu-mir-71:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 24 ctgaaagacatgggtagtgagatgtt 49
||||||||||||||||||||||||||
Sbjct: 21 ctgaaagacatgggtagtgagatgtt 46
>37726_tca-mir-71:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagatgtt 49
|||||||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgagatgtt 34
>37725_tca-mir-71:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagatgtt 49
|||||||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgagatgtt 34
>38742_cte-mir-71:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagatgt 48
||||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagatgt 45
>34966_isc-mir-71:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 ctgaaagacatgggtagtgagatg 47
||||||||||||||||||||||||
Sbjct: 21 ctgaaagacatgggtagtgagatg 44
>35532_bmo-mir-71:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagatgt 48
||||||||||||||||||||||||
Sbjct: 21 tgaaagacatgggtagtgagatgt 44
>35055_api-mir-71:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagatg 47
|||||||||||||||||||||||
Sbjct: 1 tgaaagacatgggtagtgagatg 23
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 gtctcactatcttgtctttcat 84
||||||||||||||||||||||
Sbjct: 40 gtctcactatcttgtctttcat 61
>39089_sme-mir-71c:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagat 46
||||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgagat 32
>24665_bfl-mir-71:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagat 46
||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagat 43
>34816_spu-mir-71:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgagat 46
||||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgagat 43
>38533_crm-mir-71:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgaga 45
|||||||||||||||||||||
Sbjct: 30 tgaaagacatgggtagtgaga 50
>35185_aae-mir-71:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 gaaagacatgggtagtgagat 46
|||||||||||||||||||||
Sbjct: 7 gaaagacatgggtagtgagat 27
>36015_cqu-mir-71:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 gaaagacatgggtagtgagat 46
|||||||||||||||||||||
Sbjct: 7 gaaagacatgggtagtgagat 27
>38105_bma-mir-71:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgaga 45
|||||||||||||||||||||
Sbjct: 21 tgaaagacatgggtagtgaga 41
>38180_cbr-mir-71:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgaga 45
|||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgaga 31
>38307_cel-mir-71:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 tgaaagacatgggtagtgaga 45
|||||||||||||||||||||
Sbjct: 16 tgaaagacatgggtagtgaga 36
