miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37585_ngi-mir-263b:mirbase
          Length = 86

 Score =  107 bits (54), Expect = 1e-24
 Identities = 71/76 (93%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  aggttctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtg 58
          |||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||
Sbjct: 1  aggttctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtg 60

                          
Query: 59 gatcttgcaatgccat 74
          ||||||||||||||||
Sbjct: 61 gatcttgcaatgccat 76




>37616_nlo-mir-263b:mirbase
          Length = 86

 Score =  107 bits (54), Expect = 1e-24
 Identities = 71/76 (93%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  aggttctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtg 58
          |||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||
Sbjct: 1  aggttctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtg 60

                          
Query: 59 gatcttgcaatgccat 74
          ||||||||||||||||
Sbjct: 61 gatcttgcaatgccat 76




>37658_nvi-mir-263b:mirbase
          Length = 81

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 66/71 (92%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtggatct 63
          ||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||
Sbjct: 1  ctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtggatct 60

                     
Query: 64 tgcaatgccat 74
          |||||||||||
Sbjct: 61 tgcaatgccat 71




>37764_tca-mir-263b:mirbase
          Length = 75

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 cttggcactggaagaattcacagat 40
          |||||||||||||||||||||||||
Sbjct: 10 cttggcactggaagaattcacagat 34




>37763_tca-mir-263b:mirbase
          Length = 75

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 cttggcactggaagaattcacagat 40
          |||||||||||||||||||||||||
Sbjct: 10 cttggcactggaagaattcacagat 34




>35020_dpu-mir-263b:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 cttggcactggaagaattcacaga 39
          ||||||||||||||||||||||||
Sbjct: 7  cttggcactggaagaattcacaga 30




>35074_api-mir-263b:mirbase
          Length = 62

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 cttggcactggaagaattcacaga 39
          ||||||||||||||||||||||||
Sbjct: 1  cttggcactggaagaattcacaga 24




>36192_der-mir-263b:mirbase
          Length = 89

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38




>36407_dme-mir-263b:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38




>36408_dme-mir-263b:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38




>37152_dse-mir-263b:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38




>37231_dsi-mir-263b:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38




>37520_dya-mir-263b-1:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactgggagaattcacag 37




>37521_dya-mir-263b-2:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 14 gtcttggcactggaagaattcacag 38
          ||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactgggagaattcacag 37




>36114_dan-mir-263b:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 14 tcttggcactgggagaattcacag 37




>36281_dgr-mir-263b:mirbase
          Length = 75

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 8  tcttggcactgggagaattcacag 31




>36866_dpe-mir-263b:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 15 tcttggcactgggagaattcacag 38




>36945_dps-mir-263b:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 15 tcttggcactgggagaattcacag 38




>37366_dvi-mir-263b:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 5  tcttggcactgggagaattcacag 28




>37445_dwi-mir-263b:mirbase
          Length = 70

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 15 tcttggcactggaagaattcacag 38
          |||||||||||| |||||||||||
Sbjct: 2  tcttggcactgggagaattcacag 25