miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>35303_aga-mir-278:mirbase
          Length = 83

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 aggtcggtgggactttcgtccgtttg 79
          ||||||||||||||||||||||||||
Sbjct: 51 aggtcggtgggactttcgtccgtttg 76




>35208_aae-mir-278:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 49 ggtcggtgggactttcgtccgtttg 73




>36036_cqu-mir-278:mirbase
          Length = 105

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 65 ggtcggtgggactttcgtccgtttg 89




>36120_dan-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>36198_der-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>36287_dgr-mir-278:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 56 ggtcggtgggactttcgtccgtttg 80




>36419_dme-mir-278:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>36420_dme-mir-278:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>36795_dmo-mir-278:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 57 ggtcggtgggactttcgtccgtttg 81




>36872_dpe-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>36952_dps-mir-278:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>37158_dse-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>37236_dsi-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>37372_dvi-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 56 ggtcggtgggactttcgtccgtttg 80




>37451_dwi-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>37527_dya-mir-278:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 55 ggtcggtgggactttcgtccgtttg 79
          |||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79




>35023_dpu-mir-278:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 aggtcggtgggactttcgtccgt 76
          |||||||||||||||||||||||
Sbjct: 58 aggtcggtgggactttcgtccgt 80




>34981_isc-mir-278:mirbase
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 54 aggtcggtgggactttcgtccgttt 78
          |||||||||||| ||||||||||||
Sbjct: 65 aggtcggtgggattttcgtccgttt 89




>34894_sko-mir-278:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 57 tcggtgggactttcgtccgtttgcaaga 84
          |||||||||||||||| |||||| ||||
Sbjct: 61 tcggtgggactttcgttcgtttggaaga 88




>35078_api-mir-278:mirbase
          Length = 66

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 ggtcggtgggactttcgtccgttt 78
          |||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66