miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37667_nvi-mir-307:mirbase
          Length = 98

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 73/84 (86%), Gaps = 6/84 (7%)
 Strand = Plus / Plus

                                                                       
Query: 27  cgtggactcactcaacctgggtgtgatgcttgcctgtgtat-----cagg-ccctagcgg 80
           |||| ||||||||||||||||||||||||||||| ||| |      |||| |||| ||||
Sbjct: 15  cgtgaactcactcaacctgggtgtgatgcttgcccgtgaaattgaacagggcccttgcgg 74

                                   
Query: 81  tcatcacaacctttttgagtgagc 104
           ||||||||||||||||||||||||
Sbjct: 75  tcatcacaacctttttgagtgagc 98




>35220_aae-mir-307:mirbase
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 32 actcactcaacctgggtgtgatgctt 57
          ||||||||||||||||||||||||||
Sbjct: 22 actcactcaacctgggtgtgatgctt 47




>35311_aga-mir-307:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 32 actcactcaacctgggtgtgatgctt 57
          ||||||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatgctt 45




>36136_dan-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36214_der-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36304_dgr-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36449_dme-mir-307a:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36450_dme-mir-307a:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36451_dme-mir-307b:mirbase
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 94 gactcactcaacctgggtgtgatg 71




>36452_dme-mir-307b:mirbase
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 94 gactcactcaacctgggtgtgatg 71




>36810_dmo-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36886_dpe-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36968_dps-mir-307a:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>36969_dps-mir-307b:mirbase
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 75 gactcactcaacctgggtgtgatg 52




>37174_dse-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>37250_dsi-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>37387_dvi-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>37467_dwi-mir-307:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 11 gactcactcaacctgggtgtgatg 34




>37543_dya-mir-307:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 12 gactcactcaacctgggtgtgatg 35




>37790_tca-mir-307:mirbase
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 4  gactcactcaacctgggtgtgatg 27




>37791_tca-mir-307:mirbase
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 gactcactcaacctgggtgtgatg 54
          ||||||||||||||||||||||||
Sbjct: 4  gactcactcaacctgggtgtgatg 27




>35564_bmo-mir-307:mirbase
          Length = 96

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 32 actcactcaacctgggtgtgatg 54
          |||||||||||||||||||||||
Sbjct: 16 actcactcaacctgggtgtgatg 38




>37567_lmi-mir-307:mirbase
          Length = 61

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 32 actcactcaacctgggtgtgatg 54
          |||||||||||||||||||||||
Sbjct: 1  actcactcaacctgggtgtgatg 23