miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37593_ngi-mir-375:mirbase
          Length = 70

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 60 aagtttgttcgttcggctcgagttatca 87
          ||||||||||||||||||||||||||||
Sbjct: 43 aagtttgttcgttcggctcgagttatca 70

>37670_nvi-mir-375:mirbase
          Length = 102

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 60 aagtttgttcgttcggctcgagttat 85
          ||||||||||||||||||||||||||
Sbjct: 62 aagtttgttcgttcggctcgagttat 87

>34988_isc-mir-375:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 63 tttgttcgttcggctcgagtta 84
          ||||||||||||||||||||||
Sbjct: 61 tttgttcgttcggctcgagtta 82

>35229_aae-mir-375:mirbase
          Length = 116

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 60  aagtttgttcgttcggctcgagttat 85
           ||||||||||||| ||||||||||||
Sbjct: 75  aagtttgttcgtttggctcgagttat 100

>35316_aga-mir-375-1:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 61 agtttgttcgttcggctcgagttat 85
          |||||||||||| ||||||||||||
Sbjct: 65 agtttgttcgtttggctcgagttat 89

>35317_aga-mir-375-2:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 61 agtttgttcgttcggctcgagttat 85
          |||||||||||| ||||||||||||
Sbjct: 65 agtttgttcgtttggctcgagttat 89

>36048_cqu-mir-375:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 61 agtttgttcgttcggctcgagttat 85
          |||||||||||| ||||||||||||
Sbjct: 67 agtttgttcgtttggctcgagttat 91

>24704_bfl-mir-375:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 63 tttgttcgttcggctcgagttatc 86
          ||||||||||||||||| ||||||
Sbjct: 61 tttgttcgttcggctcgcgttatc 84