miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37594_ngi-mir-927:mirbase
          Length = 90

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 tatttgttttagaattcctacgctttaccg 44
          ||||||||||||||||||||||||||||||
Sbjct: 15 tatttgttttagaattcctacgctttaccg 44




>37624_nlo-mir-927:mirbase
          Length = 90

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 tatttgttttagaattcctacgctttaccg 44
          ||||||||||||||||||||||||||||||
Sbjct: 15 tatttgttttagaattcctacgctttaccg 44




>37671_nvi-mir-927:mirbase
          Length = 102

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 tatttgttttagaattcctacgctttaccg 44
          ||||||||||||||||||||||||||||||
Sbjct: 15 tatttgttttagaattcctacgctttaccg 44




>35318_aga-mir-927:mirbase
          Length = 93

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tttgttttagaattcctacgctttacc 43
          |||||||||||||||||||||||||||
Sbjct: 11 tttgttttagaattcctacgctttacc 37




>36979_dps-mir-927:mirbase
          Length = 88

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tgttttagaattcctacgctttaccg 44
          ||||||||||||||||||||||||||
Sbjct: 12 tgttttagaattcctacgctttaccg 37




>36477_dme-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttttagaattcctacgctttaccg 44
          |||||||||||||||||||||||||
Sbjct: 14 gttttagaattcctacgctttaccg 38




>36478_dme-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttttagaattcctacgctttaccg 44
          |||||||||||||||||||||||||
Sbjct: 14 gttttagaattcctacgctttaccg 38




>37263_dsi-mir-927:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttttagaattcctacgctttaccg 44
          |||||||||||||||||||||||||
Sbjct: 15 gttttagaattcctacgctttaccg 39




>35230_aae-mir-927:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 tttgttttagaattcctacgctttaccg 44
          |||| |||||||||||||||||||||||
Sbjct: 3  tttgctttagaattcctacgctttaccg 30




>35571_bmo-mir-927:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 tttgttttagaattcctacgctttaccg 44
          |||| |||||||||||||||||||||||
Sbjct: 10 tttgctttagaattcctacgctttaccg 37




>35585_bmo-mir-1926:mirbase
          Length = 90

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                      
Query: 17 tttgttttagaattcctacgctttaccg 44
          |||| |||||||||||||||||||||||
Sbjct: 80 tttgctttagaattcctacgctttaccg 53




>35088_api-mir-927:mirbase
          Length = 59

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tttagaattcctacgctttaccg 44
          |||||||||||||||||||||||
Sbjct: 1  tttagaattcctacgctttaccg 23




>37807_tca-mir-927:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tttagaattcctacgctttaccg 44
          |||||||||||||||||||||||
Sbjct: 7  tttagaattcctacgctttaccg 29




>37808_tca-mir-927:mirbase
          Length = 68

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tttagaattcctacgctttaccg 44
          |||||||||||||||||||||||
Sbjct: 7  tttagaattcctacgctttaccg 29