miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35593_bmo-mir-2733a-3:mirbase
Length = 148
Score = 135 bits (68), Expect = 8e-33
Identities = 104/115 (90%), Gaps = 2/115 (1%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62
||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| |||||
Sbjct: 20 tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgccatcacatg 79
Query: 63 tgacatctcttctatatctctctctaatgcagtcatcatactctcagttgatatg 117
| |||||||||| ||| |||||||||| ||||||||| ||||||||||||||||
Sbjct: 80 taacatctcttc--tatttctctctaatacagtcatcacactctcagttgatatg 132
>35605_bmo-mir-2733j:mirbase
Length = 105
Score = 93.7 bits (47), Expect = 3e-20
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 71 cttctatatctctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttctatatctctctctaatgcagtcatcatactctcagttgatatg 47
Score = 71.9 bits (36), Expect = 1e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgc 50
||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 58 tatcactgggtgcatgatgatcgtggtagagagatcatcacatcacgc 105
>35764_bmo-mir-2851-2:mirbase
Length = 99
Score = 87.7 bits (44), Expect = 2e-18
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 1 tatatcactgggtgcatgatgattgtgatagagagatcaccaca 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tatatcactgggtgcatgatgattgtgatagagagatcaccaca 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||| ||||||||| ||||||||||||||||
Sbjct: 89 tctctctaatacagtcatcacactctcagttgatatg 53
>35602_bmo-mir-2733g:mirbase
Length = 112
Score = 83.8 bits (42), Expect = 3e-17
Identities = 99/119 (83%), Gaps = 13/119 (10%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62
||||||||||||||||| ||||||| || |||||||| |||||||||| ||| |
Sbjct: 1 tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgccgcc-------g 53
Query: 63 tgacatctcttcta------tatctctctctaatgcagtcatcatactctcagttgata 115
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 54 tgacatctcttctagctgtctttctctctctaatgcagtcatcatactctgagttgata 112
>35595_bmo-mir-2733b-2:mirbase
Length = 129
Score = 81.8 bits (41), Expect = 1e-16
Identities = 98/115 (85%), Gaps = 4/115 (3%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62
||||||||||||| ||||||||||| |||||| | ||||| |||| |||| |||||
Sbjct: 9 tatcactgggtgcgtgatgattgtggtagagatttt--cacataacgccaccatcacatg 66
Query: 63 tgacatctcttctatatctctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||| || | |||||| ||||||||||||||||||| |||||||||||
Sbjct: 67 tgacatctctcctgt--ctctctgtaatgcagtcatcatactcacagttgatatg 119
>35603_bmo-mir-2733h:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tctctctaatgcagtcatcatactctgagttgatatg 37
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagaga 36
|||||||||||| |||||||||||| ||||||||
Sbjct: 48 tatcactgggtgtatgatgattgtggtagagaga 81
>35597_bmo-mir-2733d:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 80 ctctctctaatgcagtcatcatactctcagttgatatg 117
|||||| ||||||||||||||||||| |||||||||||
Sbjct: 1 ctctctgtaatgcagtcatcatactcacagttgatatg 38
>35591_bmo-mir-2733a-1:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||| ||||||||| ||||||||||||||||
Sbjct: 3 tctctctaatacagtcatcacactctcagttgatatg 39
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagagagat 37
||||||||||||||||||||||||| || ||||||
Sbjct: 50 tatcactgggtgcatgatgattgtggtacagagat 84
>35763_bmo-mir-2851-1:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||| ||||||||| ||||||||||||||||
Sbjct: 89 tctctctaatacagtcatcacactctcagttgatatg 53
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 3 tatcactgggtgcatgatgattgtgatagagagat 37
||||||||||||||||||||||||| || ||||||
Sbjct: 42 tatcactgggtgcatgatgattgtggtacagagat 8
>35594_bmo-mir-2733b-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 tctctctaatgcagtcatcatactctcagttgatatg 117
|||||||||| |||||||| ||||||||||||||||
Sbjct: 1 tctctctaatatagtcatcacactctcagttgatatg 37
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 tatcactgggtgcatgatgattgtgatagaga 34
||||||||||||| ||||||||||| ||||||
Sbjct: 48 tatcactgggtgcgtgatgattgtggtagaga 79
