miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35592_bmo-mir-2733a-2:mirbase
Length = 117
Score = 135 bits (68), Expect = 1e-32
Identities = 104/115 (90%), Gaps = 2/115 (1%)
Strand = Plus / Plus
Query: 20 tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgccatcacatg 79
||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| |||||
Sbjct: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62
Query: 80 taacatctcttc--tatttctctctaatacagtcatcacactctcagttgatatg 132
| |||||||||| ||| |||||||||| ||||||||| ||||||||||||||||
Sbjct: 63 tgacatctcttctatatctctctctaatgcagtcatcatactctcagttgatatg 117
>35764_bmo-mir-2851-2:mirbase
Length = 99
Score = 125 bits (63), Expect = 1e-29
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 86 ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 40
Query: 146 cac 148
|||
Sbjct: 39 cac 37
Score = 79.8 bits (40), Expect = 5e-16
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagatca 56
||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gttgatatgtgtaacattatatcactgggtgcatgatgattgtgatagagagatca 6
>35763_bmo-mir-2851-1:mirbase
Length = 99
Score = 117 bits (59), Expect = 2e-27
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 86 ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 99 ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattctat 40
Query: 146 cac 148
|||
Sbjct: 39 cac 37
Score = 83.8 bits (42), Expect = 3e-17
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagat 54
||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 gttgatatgtgtaacattctatcactgggtgcatgatgattgtggtacagagat 8
>35591_bmo-mir-2733a-1:mirbase
Length = 84
Score = 101 bits (51), Expect = 1e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 94 tttctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tttctctctaatacagtcatcacactctcagttgatatgtgtaacattctatcac 55
Score = 83.8 bits (42), Expect = 3e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagat 54
||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 31 gttgatatgtgtaacattctatcactgggtgcatgatgattgtggtacagagat 84
>35595_bmo-mir-2733b-2:mirbase
Length = 129
Score = 101 bits (51), Expect = 1e-22
Identities = 102/118 (86%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 16 attctatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgccatca 75
||||||||||||||||| |||||||||||||||||| | || ||| ||||| ||||||
Sbjct: 5 attctatcactgggtgcgtgatgattgtggtagagattt--tcacataacgccaccatca 62
Query: 76 catgtaacatctcttctatttctctctaatacagtcatcacactctcagttgatatgt 133
||||| |||||||| || | ||||| |||| ||||||||| |||| ||||||||||||
Sbjct: 63 catgtgacatctctcctgtctctctgtaatgcagtcatcatactcacagttgatatgt 120
>35605_bmo-mir-2733j:mirbase
Length = 105
Score = 101 bits (51), Expect = 1e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagatcatctc 60
||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 39 gttgatatgtgtaacattctatcactgggtgcatgatgatcgtggtagagagatcatcac 98
Query: 61 atcacgc 67
|||||||
Sbjct: 99 atcacgc 105
Score = 81.8 bits (41), Expect = 1e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 96 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
|||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 11 tctctctaatgcagtcatcatactctcagttgatatgtgtaacattctatcac 63
>35603_bmo-mir-2733h:mirbase
Length = 81
Score = 97.6 bits (49), Expect = 2e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagaga 53
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29 gttgatatgtggaaaattctatcactgggtgtatgatgattgtggtagagaga 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 96 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
|||||||||| ||||||||| ||||| |||||||||||| || ||| ||||||
Sbjct: 1 tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcac 53
>35594_bmo-mir-2733b-1:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 5e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 96 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tctctctaatatagtcatcacactctcagttgatatgtgtaacattctatcac 53
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagaga 51
||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct: 29 gttgatatgtgtaacattctatcactgggtgcgtgatgattgtggtagaga 79
>35602_bmo-mir-2733g:mirbase
Length = 112
Score = 79.8 bits (40), Expect = 5e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 20 tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgcc 71
||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct: 1 tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgccgcc 52
>35597_bmo-mir-2733d:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 16 attctatcactgggtgcatgatgattgtggtagagaga 53
|||||||||||||||| |||| |||||||||| |||||
Sbjct: 45 attctatcactgggtgtatgaagattgtggtacagaga 82
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 96 tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
||||| |||| ||||||||| |||| |||||||||||| | ||||| ||||||
Sbjct: 2 tctctgtaatgcagtcatcatactcacagttgatatgtttgacattctatcac 54
