miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>35592_bmo-mir-2733a-2:mirbase
          Length = 117

 Score =  135 bits (68), Expect = 1e-32
 Identities = 104/115 (90%), Gaps = 2/115 (1%)
 Strand = Plus / Plus

                                                                       
Query: 20  tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgccatcacatg 79
           ||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| |||||
Sbjct: 3   tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62

                                                                  
Query: 80  taacatctcttc--tatttctctctaatacagtcatcacactctcagttgatatg 132
           | ||||||||||  ||| |||||||||| ||||||||| ||||||||||||||||
Sbjct: 63  tgacatctcttctatatctctctctaatgcagtcatcatactctcagttgatatg 117




>35764_bmo-mir-2851-2:mirbase
          Length = 99

 Score =  125 bits (63), Expect = 1e-29
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                       
Query: 86  ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 40

              
Query: 146 cac 148
           |||
Sbjct: 39  cac 37



 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                  
Query: 1  gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagatca 56
          ||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gttgatatgtgtaacattatatcactgggtgcatgatgattgtgatagagagatca 6




>35763_bmo-mir-2851-1:mirbase
          Length = 99

 Score =  117 bits (59), Expect = 2e-27
 Identities = 62/63 (98%)
 Strand = Plus / Minus

                                                                       
Query: 86  ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattatat 145
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 99  ctcttctatttctctctaatacagtcatcacactctcagttgatatgtgtaacattctat 40

              
Query: 146 cac 148
           |||
Sbjct: 39  cac 37



 Score = 83.8 bits (42), Expect = 3e-17
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                
Query: 1  gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagat 54
          ||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 gttgatatgtgtaacattctatcactgggtgcatgatgattgtggtacagagat 8




>35591_bmo-mir-2733a-1:mirbase
          Length = 84

 Score =  101 bits (51), Expect = 1e-22
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                  
Query: 94  tttctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1   tttctctctaatacagtcatcacactctcagttgatatgtgtaacattctatcac 55



 Score = 83.8 bits (42), Expect = 3e-17
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                
Query: 1  gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagat 54
          ||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 31 gttgatatgtgtaacattctatcactgggtgcatgatgattgtggtacagagat 84




>35595_bmo-mir-2733b-2:mirbase
          Length = 129

 Score =  101 bits (51), Expect = 1e-22
 Identities = 102/118 (86%), Gaps = 2/118 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  attctatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgccatca 75
           ||||||||||||||||| ||||||||||||||||||  |  || ||| ||||| ||||||
Sbjct: 5   attctatcactgggtgcgtgatgattgtggtagagattt--tcacataacgccaccatca 62

                                                                     
Query: 76  catgtaacatctcttctatttctctctaatacagtcatcacactctcagttgatatgt 133
           ||||| |||||||| || | ||||| |||| ||||||||| |||| ||||||||||||
Sbjct: 63  catgtgacatctctcctgtctctctgtaatgcagtcatcatactcacagttgatatgt 120




>35605_bmo-mir-2733j:mirbase
          Length = 105

 Score =  101 bits (51), Expect = 1e-22
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagagatcatctc 60
           ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 39  gttgatatgtgtaacattctatcactgggtgcatgatgatcgtggtagagagatcatcac 98

                  
Query: 61  atcacgc 67
           |||||||
Sbjct: 99  atcacgc 105



 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                
Query: 96  tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
           |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 11  tctctctaatgcagtcatcatactctcagttgatatgtgtaacattctatcac 63




>35603_bmo-mir-2733h:mirbase
          Length = 81

 Score = 97.6 bits (49), Expect = 2e-21
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                               
Query: 1  gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagagaga 53
          ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29 gttgatatgtggaaaattctatcactgggtgtatgatgattgtggtagagaga 81



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 96  tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
           |||||||||| ||||||||| ||||| |||||||||||| || ||| ||||||
Sbjct: 1   tctctctaatgcagtcatcatactctgagttgatatgtggaaaattctatcac 53




>35594_bmo-mir-2733b-1:mirbase
          Length = 80

 Score = 89.7 bits (45), Expect = 5e-19
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                
Query: 96  tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
           ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1   tctctctaatatagtcatcacactctcagttgatatgtgtaacattctatcac 53



 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                             
Query: 1  gttgatatgtggaaaattctatcactgggtgcatgatgattgtggtagaga 51
          ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct: 29 gttgatatgtgtaacattctatcactgggtgcgtgatgattgtggtagaga 79




>35602_bmo-mir-2733g:mirbase
          Length = 112

 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                              
Query: 20 tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgcc 71
          ||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct: 1  tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgccgcc 52




>35597_bmo-mir-2733d:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 16 attctatcactgggtgcatgatgattgtggtagagaga 53
          |||||||||||||||| |||| |||||||||| |||||
Sbjct: 45 attctatcactgggtgtatgaagattgtggtacagaga 82



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 96  tctctctaatacagtcatcacactctcagttgatatgtgtaacattatatcac 148
           ||||| |||| ||||||||| |||| |||||||||||| | ||||| ||||||
Sbjct: 2   tctctgtaatgcagtcatcatactcacagttgatatgtttgacattctatcac 54