miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37489_dya-mir-6-1:mirbase
          Length = 71

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 60/68 (88%), Gaps = 5/68 (7%)
 Strand = Plus / Plus

                                                                      
Query: 3  gtagagagaatagtggctgtgctgtaagttt----caaa-atctatatcacagtggctgt 57
          |||||| ||||||| |||||||||||||||     |||| ||||||||||||||||||||
Sbjct: 2  gtagagggaatagttgctgtgctgtaagttaataacaaatatctatatcacagtggctgt 61

                  
Query: 58 tctttttg 65
          ||||||||
Sbjct: 62 tctttttg 69




>37121_dse-mir-6-1:mirbase
          Length = 71

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 59/69 (85%), Gaps = 5/69 (7%)
 Strand = Plus / Plus

                                                                      
Query: 2  agtagagagaatagtggctgtgctgtaagttt-----caaaatctatatcacagtggctg 56
          ||||||| ||||||| |||||||||||||||      | | |||||||||||||||||||
Sbjct: 1  agtagagggaatagttgctgtgctgtaagttaatataccatatctatatcacagtggctg 60

                   
Query: 57 ttctttttg 65
          |||||||||
Sbjct: 61 ttctttttg 69




>37199_dsi-mir-6-1:mirbase
          Length = 71

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 59/69 (85%), Gaps = 5/69 (7%)
 Strand = Plus / Plus

                                                                      
Query: 2  agtagagagaatagtggctgtgctgtaagtttcaaaa-----tctatatcacagtggctg 56
          ||||||| ||||||| ||||||||||||||||  | |     ||||||||||||||||||
Sbjct: 1  agtagagggaatagttgctgtgctgtaagtttatataccgtatctatatcacagtggctg 60

                   
Query: 57 ttctttttg 65
          |||||||||
Sbjct: 61 ttctttttg 69




>36161_der-mir-6-1:mirbase
          Length = 71

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 38 atctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||||
Sbjct: 42 atctatatcacagtggctgttctttttg 69




>36337_dme-mir-6-1:mirbase
          Length = 82

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 38 atctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||||
Sbjct: 47 atctatatcacagtggctgttctttttg 74




>36338_dme-mir-6-1:mirbase
          Length = 82

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 38 atctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||||
Sbjct: 47 atctatatcacagtggctgttctttttg 74




>36246_dgr-mir-6-1:mirbase
          Length = 70

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68




>36249_dgr-mir-6-4:mirbase
          Length = 70

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68




>36760_dmo-mir-6-2:mirbase
          Length = 81

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 51 tctatatcacagtggctgttctttttg 77




>36834_dpe-mir-6-3:mirbase
          Length = 83

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 54 tctatatcacagtggctgttctttttg 80




>36909_dps-mir-6-2:mirbase
          Length = 83

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 54 tctatatcacagtggctgttctttttg 80




>37335_dvi-mir-6-1:mirbase
          Length = 70

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68




>37411_dwi-mir-6-2:mirbase
          Length = 94

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 65 tctatatcacagtggctgttctttttg 91




>37490_dya-mir-6-2:mirbase
          Length = 74

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 tctatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||||
Sbjct: 44 tctatatcacagtggctgttctttttg 70




>36084_dan-mir-6-2:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttg 80




>36162_der-mir-6-2:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69




>36247_dgr-mir-6-2:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttg 75




>36250_dgr-mir-6-5:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttg 75




>36339_dme-mir-6-2:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70




>36340_dme-mir-6-2:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70




>37122_dse-mir-6-2:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70




>37200_dsi-mir-6-2:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 ctatatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70




>36759_dmo-mir-6-1:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 tatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||
Sbjct: 40 tatatcacagtggctgttctttttg 64




>36832_dpe-mir-6-1:mirbase
          Length = 69

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 tatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  agtagagagaatagtggctgtgct 25
          ||||||||||||||| ||||||||
Sbjct: 1  agtagagagaatagttgctgtgct 24




>36908_dps-mir-6-1:mirbase
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 tatatcacagtggctgttctttttg 65
          |||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttctttttg 72



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagtagagagaatagtggctgtgct 25
          |||||||||||||||| ||||||||
Sbjct: 5  aagtagagagaatagttgctgtgct 29




>36085_dan-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>36163_der-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36248_dgr-mir-6-3:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36251_dgr-mir-6-6:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36341_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36342_dme-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36761_dmo-mir-6-3:mirbase
          Length = 78

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36833_dpe-mir-6-2:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36910_dps-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37123_dse-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37201_dsi-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>37336_dvi-mir-6-2:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 42 atatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttg 76




>37337_dvi-mir-6-3:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70




>37410_dwi-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 42 atatcacagtggctgttctttttg 65
          ||||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttctttttg 67




>37412_dwi-mir-6-3:mirbase
          Length = 76

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>37491_dya-mir-6-3:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 tatatcacagtggctgttcttttt 64
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74