miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36833_dpe-mir-6-2:mirbase
          Length = 80

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 72/80 (90%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtta----ttcgcatcatttatatcacag 56
          |||||||||||||||||| |||||||||||||||     ||||||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgctgatgtagttcaagtttcgcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>36910_dps-mir-6-3:mirbase
          Length = 80

 Score = 85.7 bits (43), Expect = 4e-18
 Identities = 71/80 (88%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtta----ttcgcatcatttatatcacag 56
          |||||||||||||||||| |||||||||||||||     || |||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgctgatgtagttcaagttttgcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>36163_der-mir-6-3:mirbase
          Length = 80

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/80 (87%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || ||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggtggctgatgatgtagttcgaaactctcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>36341_dme-mir-6-3:mirbase
          Length = 80

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/80 (87%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || ||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgatgatgtagtttgaaactctcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>36342_dme-mir-6-3:mirbase
          Length = 80

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/80 (87%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || ||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgatgatgtagtttgaaactctcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>37123_dse-mir-6-3:mirbase
          Length = 80

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/80 (87%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || ||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgatgatgtagttcgaaactctcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>37201_dsi-mir-6-3:mirbase
          Length = 80

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/80 (87%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || ||  |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgatgatgtagttcgaaactctcacaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||||||||
Sbjct: 61 tggctgttcttttttgtttg 80




>36761_dmo-mir-6-3:mirbase
          Length = 78

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 45 tttatatcacagtggctgttcttttttgttt 75
          |||||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgttt 78




>37491_dya-mir-6-3:mirbase
          Length = 80

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 68/80 (85%), Gaps = 4/80 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
          |||||||||||||||||| |||| ||||||||||    | || |   |||||||||||||
Sbjct: 1  caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60

                              
Query: 57 tggctgttcttttttgtttg 76
          ||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttatttg 80




>36248_dgr-mir-6-3:mirbase
          Length = 74

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 61/71 (85%), Gaps = 4/71 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  gaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagtggctg 62
          |||| ||||| |||||||||||||||||    ||||  ||  ||||||||||||||||||
Sbjct: 4  gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63

                     
Query: 63 ttcttttttgt 73
          |||||||||||
Sbjct: 64 ttcttttttgt 74




>36251_dgr-mir-6-6:mirbase
          Length = 74

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 61/71 (85%), Gaps = 4/71 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  gaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacagtggctg 62
          |||| ||||| |||||||||||||||||    ||||  ||  ||||||||||||||||||
Sbjct: 4  gaagagaacgctcgctgctgatgtagttcatgattcaaatattttatatcacagtggctg 63

                     
Query: 63 ttcttttttgt 73
          |||||||||||
Sbjct: 64 ttcttttttgt 74




>37337_dvi-mir-6-3:mirbase
          Length = 73

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 tttatatcacagtggctgttcttttttgt 73
          |||||||||||||||||||||||||||||
Sbjct: 45 tttatatcacagtggctgttcttttttgt 73




>36759_dmo-mir-6-1:mirbase
          Length = 66

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 43 catttatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||||||
Sbjct: 36 catttatatcacagtggctgttcttttt 63




>37412_dwi-mir-6-3:mirbase
          Length = 76

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 47 tatatcacagtggctgttcttttttgt 73
          |||||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttttgt 76



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  aaagaagggaacggtcgctgctgatgtagt 33
          ||||||||||||||| |||| |||||||||
Sbjct: 1  aaagaagggaacggttgctgttgatgtagt 30




>36083_dan-mir-6-1:mirbase
          Length = 68

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 41 tatatcacagtggctgttcttttt 64




>36084_dan-mir-6-2:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>36161_der-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>36162_der-mir-6-2:mirbase
          Length = 73

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>36246_dgr-mir-6-1:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>36247_dgr-mir-6-2:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36249_dgr-mir-6-4:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>36250_dgr-mir-6-5:mirbase
          Length = 79

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74




>36337_dme-mir-6-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36338_dme-mir-6-1:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73




>36339_dme-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>36340_dme-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>36760_dmo-mir-6-2:mirbase
          Length = 81

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76




>36832_dpe-mir-6-1:mirbase
          Length = 69

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66




>36834_dpe-mir-6-3:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>36908_dps-mir-6-1:mirbase
          Length = 80

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71




>36909_dps-mir-6-2:mirbase
          Length = 83

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79




>37121_dse-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37122_dse-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37199_dsi-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37200_dsi-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37335_dvi-mir-6-1:mirbase
          Length = 70

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67




>37411_dwi-mir-6-2:mirbase
          Length = 94

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 67 tatatcacagtggctgttcttttt 90




>37489_dya-mir-6-1:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68




>37490_dya-mir-6-2:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 tatatcacagtggctgttcttttt 70
          ||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69




>37336_dvi-mir-6-2:mirbase
          Length = 80

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 atatcacagtggctgttcttttt 70
          |||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75




>37410_dwi-mir-6-1:mirbase
          Length = 69

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 atatcacagtggctgttcttttt 70
          |||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttcttttt 66