miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
|||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 60 ttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtctttgca 89
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 60 ttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>37127_dse-mir-9b:mirbase
Length = 89
Score = 121 bits (61), Expect = 9e-29
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctca-tattccatagagct 59
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
Query: 60 ttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttctgca 89
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 119 bits (60), Expect = 3e-28
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 6 attatttgttctttggtgattttagctgtatggtgtct---catattccatagagcttta 62
|||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 5 attatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagcttta 64
Query: 63 ttaccaaaaaccaaatggtttttgca 88
||||||||||||||||||||||||||
Sbjct: 65 ttaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 119 bits (60), Expect = 3e-28
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 6 attatttgttctttggtgattttagctgtatggtgtct---catattccatagagcttta 62
|||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 5 attatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagcttta 64
Query: 63 ttaccaaaaaccaaatggtttttgca 88
||||||||||||||||||||||||||
Sbjct: 65 ttaccaaaaaccaaatggtttttgca 90
>36167_der-mir-9b:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctca-tattccatagagct 59
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatgtgttccatagagct 60
Query: 60 ttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
|||| |||||||| |||||||||||||||||| |||||||| | |||| |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
Query: 60 ttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36349_dme-mir-9b:mirbase
Length = 91
Score = 113 bits (57), Expect = 2e-26
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctc---atattccatagag 57
|||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 58 ctttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 113 bits (57), Expect = 2e-26
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctc---atattccatagag 57
|||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 58 ctttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37496_dya-mir-9b:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 81/91 (89%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctca---tattccatagag 57
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 58 ctttattaccaaaaaccaaatggtttttgca 88
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 95.6 bits (48), Expect = 5e-21
Identities = 82/91 (90%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtg--tctcata-ttccatagag 57
||||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 58 ctttattaccaaaaaccaaatggtttttgca 88
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 95.6 bits (48), Expect = 5e-21
Identities = 82/91 (90%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcacattatttgttctttggtgattttagctgtatggtg--tctcata-ttccatagag 57
||||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 58 ctttattaccaaaaaccaaatggtttttgca 88
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctttggtgattttagctgtatg 37
||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37
