miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36331_dme-mir-3:mirbase
          Length = 69

 Score =  129 bits (65), Expect = 3e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60

                   
Query: 61 ctcaagatc 69
          |||||||||
Sbjct: 61 ctcaagatc 69




>36332_dme-mir-3:mirbase
          Length = 69

 Score =  129 bits (65), Expect = 3e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60

                   
Query: 61 ctcaagatc 69
          |||||||||
Sbjct: 61 ctcaagatc 69




>37118_dse-mir-3:mirbase
          Length = 69

 Score =  129 bits (65), Expect = 3e-31
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60

                   
Query: 61 ctcaagatc 69
          |||||||||
Sbjct: 61 ctcaagatc 69




>37196_dsi-mir-3:mirbase
          Length = 69

 Score =  121 bits (61), Expect = 6e-29
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagttatgttccaatctcacatcactgggcaaagtgtgt 60

                   
Query: 61 ctcaagatc 69
          |||||||||
Sbjct: 61 ctcaagatc 69




>37486_dya-mir-3:mirbase
          Length = 69

 Score =  121 bits (61), Expect = 6e-29
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60

                   
Query: 61 ctcaagatc 69
          |||||||||
Sbjct: 61 ctcaagatc 69




>36829_dpe-mir-3:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gatcctgggatgcatcttgtgcagttatgt 30
          ||||||||||||||| ||||||||||||||
Sbjct: 1  gatcctgggatgcattttgtgcagttatgt 30



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 catcactgggcaaagtgtgtctca 64
          ||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69




>36905_dps-mir-3:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gatcctgggatgcatcttgtgcagttatgt 30
          ||||||||||||||| ||||||||||||||
Sbjct: 1  gatcctgggatgcattttgtgcagttatgt 30



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 catcactgggcaaagtgtgtctca 64
          ||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69




>36080_dan-mir-3:mirbase
          Length = 73

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 41 catcactgggcaaagtgtgtctcaagatc 69
          |||||||||||||||||||||||| ||||
Sbjct: 45 catcactgggcaaagtgtgtctcaggatc 73




>36240_dgr-mir-3-1:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctcaa 65




>36241_dgr-mir-3-2:mirbase
          Length = 66

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctcaa 65




>36756_dmo-mir-3:mirbase
          Length = 65

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctcaa 64




>37332_dvi-mir-3:mirbase
          Length = 65

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctcaa 64




>37407_dwi-mir-3:mirbase
          Length = 78

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 36 tctcacatcactgggcaaagtgtgtctca 64
          |||| ||||||||||||||||||||||||
Sbjct: 46 tctctcatcactgggcaaagtgtgtctca 74



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  tgggatgcatcttgtgcagttatgt 30
          |||||||||| ||||||||||||||
Sbjct: 7  tgggatgcattttgtgcagttatgt 31