miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40334_rco-MIR156e:mirbase
Length = 95
Score = 111 bits (56), Expect = 1e-25
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattag-ctaaagagtctttgcttttgttggga 71
||||||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||
Sbjct: 6 tgacagaagagagagagcacaacccggcattaggctaaagagtctttgcctttgttggga 65
Query: 72 gtgtgctctctcttctcctgtcat 95
|||||||||||| ||| |||||||
Sbjct: 66 gtgtgctctctcctcttctgtcat 89
>41080_tcc-MIR156a:mirbase
Length = 124
Score = 105 bits (53), Expect = 6e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaaga--gtctttgcttttgttggg 70
||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgttggg 80
Query: 71 agtgtgctctctcttctcctgtca 94
|||||||| |||||||| ||||||
Sbjct: 81 agtgtgctttctcttcttctgtca 104
>41561_vvi-MIR156a:mirbase
Length = 104
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaagagtctttgcttttgttgggag 72
||||||||||||| ||| ||||||| ||| ||||||||| ||||||||||| |||||||
Sbjct: 11 tgacagaagagagggagcacaacccagcatcagctaaagactctttgcttttcttgggag 70
Query: 73 tgtgctctctcttctcctgtcat 95
||||||||||||||| |||||||
Sbjct: 71 tgtgctctctcttcttctgtcat 93
>40430_gma-MIR156f:mirbase
Length = 106
Score = 79.8 bits (40), Expect = 4e-16
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaag-agtctttgcttttgttggga 71
||||||||||||||||| |||||||| | | | ||||| ||||||||| ||||||||||
Sbjct: 12 tgacagaagagagagagcacaacccgggaatggttaaaggagtctttgcctttgttggga 71
Query: 72 gtgtgctctctcttctcctgtcat 95
||||||||||||||| |||||||
Sbjct: 72 gtgtgctctctcttcctctgtcat 95
>40426_gma-MIR156b:mirbase
Length = 120
Score = 79.8 bits (40), Expect = 4e-16
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaag-agtctttgcttttgttggga 71
||||||||||||||||| |||||||| | | ||||||| ||||||||| ||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttggga 80
Query: 72 gtgtgctctctcttctcctgtcat 95
|||||| |||||||| |||||||
Sbjct: 81 gtgtgccctctcttcctctgtcat 104
>41204_aqc-MIR529:mirbase
Length = 125
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaagag--tctttgcttttgttggg 70
||||||||||||||||| ||||||| ||| |||||||||| ||||| |||||||||||
Sbjct: 18 tgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttggg 77
Query: 71 agtgtgctct 80
||||||||||
Sbjct: 78 agtgtgctct 87
>41298_ptc-MIR156k:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 72/84 (85%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccgccattagctaaagag--tctttgcttttgttggg 70
||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||| ||
Sbjct: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69
Query: 71 agtgtgctctctcttctcctgtca 94
| |||||| |||||||| ||||||
Sbjct: 70 actgtgctttctcttcttctgtca 93
>41914_osa-MIR156k:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 tgatgacagaagagagagagtacaacccg 38
|||||||||||||||||||| ||||||||
Sbjct: 8 tgatgacagaagagagagagcacaacccg 36
>42488_sbi-MIR156d:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgatgacagaagagagagagtacaaccc 37
|||||||||||||||||||| |||||||
Sbjct: 18 tgatgacagaagagagagagcacaaccc 45
>42687_zma-MIR156j:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gatgacagaagagagagagtacaaccc 37
||||||||||||||||||| |||||||
Sbjct: 19 gatgacagaagagagagagcacaaccc 45
>40396_ahy-MIR156c:mirbase
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccg 38
||||||||||||||||| ||||||||
Sbjct: 22 tgacagaagagagagagcacaacccg 47
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 62 tttgttgggagtgtgctctctcttctcctgtcat 95
||||||||||||||||||||| ||| |||||||
Sbjct: 73 tttgttgggagtgtgctctctactcttctgtcat 106
>40393_ahy-MIR156a:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagagagtacaacccg 38
||||||||||||||||| ||||||||
Sbjct: 18 tgacagaagagagagagcacaacccg 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 62 tttgttgggagtgtgctctctcttctcctgtcat 95
||||||||||||||||||||| ||| |||||||
Sbjct: 69 tttgttgggagtgtgctctctactcttctgtcat 102
