miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>37334_dvi-mir-5:mirbase
Length = 70
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 ctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgatttt 61
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 ctaaaaggaacgatcgttgtgatatgcgttcatt-aaccgttacatatcacagtgatttt 59
Query: 62 cctttatagcg 72
|||||||||||
Sbjct: 60 cctttatagcg 70
>36831_dpe-mir-5:mirbase
Length = 72
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcac-cgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>36907_dps-mir-5:mirbase
Length = 72
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcac-cgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>36758_dmo-mir-5:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaatcgac-cgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>37409_dwi-mir-5:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 2e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36082_dan-mir-5:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 4e-18
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattttc 62
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccc-tcgttacatatcacagtgattttc 59
Query: 63 ctttata 69
|||||||
Sbjct: 60 ctttata 66
>37488_dya-mir-5:mirbase
Length = 64
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattttc 62
||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtt-att---ccctaacatatcacagtgattttc 56
Query: 63 ctttata 69
|||||||
Sbjct: 57 ctttata 63
>36335_dme-mir-5:mirbase
Length = 69
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/69 (86%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||| ||| | || | |||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
Query: 61 tcctttata 69
|||||||||
Sbjct: 57 tcctttata 65
>36336_dme-mir-5:mirbase
Length = 69
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/69 (86%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
||||||||||||||||||||||||||| ||| | || | |||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
Query: 61 tcctttata 69
|||||||||
Sbjct: 57 tcctttata 65
>36160_der-mir-5:mirbase
Length = 64
Score = 60.0 bits (30), Expect = 2e-10
Identities = 58/67 (86%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattttc 62
||||||||||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgtt----ccctaacatatcacagtgattttc 56
Query: 63 ctttata 69
|||||||
Sbjct: 57 ctttata 63
>37120_dse-mir-5:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 acatatcacagtgattttcctttata 69
||||||||||||||||||||||||||
Sbjct: 38 acatatcacagtgattttcctttata 63
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatg 25
>37198_dsi-mir-5:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 acatatcacagtgattttcctttata 69
||||||||||||||||||||||||||
Sbjct: 37 acatatcacagtgattttcctttata 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatg 25
