miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36829_dpe-mir-3:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgtctacgtgatcatcctcatcactgggcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcattttgtgcagttatgtctacgtgatcatcctcatcactgggcaaag 60
Query: 61 tgtgtctcaggat 73
|||||||||||||
Sbjct: 61 tgtgtctcaggat 73
>37407_dwi-mir-3:mirbase
Length = 78
Score = 67.9 bits (34), Expect = 9e-13
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 6 tgggatgcattttgtgcagttatgtct--acgtgatcat--cctcatcactgggcaaagt 61
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 7 tgggatgcattttgtgcagttatgtcttcatgtgataattctctcatcactgggcaaagt 66
Query: 62 gtgtctca 69
||||||||
Sbjct: 67 gtgtctca 74
>36080_dan-mir-3:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctcaggat 73
||||||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaggat 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatg 29
|||| ||||| ||||||||||||||||||
Sbjct: 1 gatcttgggacgcattttgtgcagttatg 29
>36158_der-mir-3:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36331_dme-mir-3:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36332_dme-mir-3:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>37118_dse-mir-3:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>37196_dsi-mir-3:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36240_dgr-mir-3-1:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36241_dgr-mir-3-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36756_dmo-mir-3:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctca 63
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 tgggatgcattttgtgcag 24
|||||||||||||||||||
Sbjct: 1 tgggatgcattttgtgcag 19
>37332_dvi-mir-3:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctca 63
>37486_dya-mir-3:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||| ||||
Sbjct: 1 gatcctgggatgcatcttgtgcagtcatgt 30
>35313_aga-mir-309:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 44 ctcatcactgggcaaagtgtgtc 66
|||||||||||||||||| ||||
Sbjct: 45 ctcatcactgggcaaagtttgtc 67
