miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36831_dpe-mir-5:mirbase
Length = 72
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
Query: 61 cctttatagcgc 72
||||||||||||
Sbjct: 61 cctttatagcgc 72
>36758_dmo-mir-5:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgatttt 60
Query: 61 cctttatagcgc 72
||||||||||||
Sbjct: 61 cctttatagcgc 72
>37334_dvi-mir-5:mirbase
Length = 70
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 2 ctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttc 61
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
Query: 62 ctttatagcg 71
||||||||||
Sbjct: 61 ctttatagcg 70
>37409_dwi-mir-5:mirbase
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgtta-attcaccgttacatatcacagtgattt 59
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
Query: 60 tcctttatagcgc 72
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcac-cgttacatatcacagtgattt 59
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 60 tcctttatagcgc 72
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcac-cgttacatatcacagtgattt 59
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 60 tcctttatagcgc 72
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36082_dan-mir-5:mirbase
Length = 67
Score = 99.6 bits (50), Expect = 2e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60
Query: 63 tttata 68
||||||
Sbjct: 61 tttata 66
>37488_dya-mir-5:mirbase
Length = 64
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
|||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttatt---ccctaacatatcacagtgattttcc 57
Query: 63 tttata 68
||||||
Sbjct: 58 tttata 63
>36160_der-mir-5:mirbase
Length = 64
Score = 71.9 bits (36), Expect = 6e-14
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgtt---ccctaacatatcacagtgattttcc 57
Query: 63 tttata 68
||||||
Sbjct: 58 tttata 63
>36335_dme-mir-5:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
Query: 61 cctttata 68
||||||||
Sbjct: 58 cctttata 65
>36336_dme-mir-5:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
Query: 61 cctttata 68
||||||||
Sbjct: 58 cctttata 65
>37120_dse-mir-5:mirbase
Length = 64
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttg-ttc-ccga-acatatcacagtgattttcc 57
Query: 63 tttata 68
||||||
Sbjct: 58 tttata 63
>37198_dsi-mir-5:mirbase
Length = 63
Score = 56.0 bits (28), Expect = 3e-09
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttg-ttccca---acatatcacagtgattttcc 56
Query: 63 tttata 68
||||||
Sbjct: 57 tttata 62
