miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36160_der-mir-5:mirbase
Length = 64
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgttccctaacatatcacagtgattttccttt 60
Query: 61 ataa 64
||||
Sbjct: 61 ataa 64
>36335_dme-mir-5:mirbase
Length = 69
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
Query: 61 ataa 64
||||
Sbjct: 63 ataa 66
>36336_dme-mir-5:mirbase
Length = 69
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
Query: 61 ataa 64
||||
Sbjct: 63 ataa 66
>37198_dsi-mir-5:mirbase
Length = 63
Score = 109 bits (55), Expect = 2e-25
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttgttccc-aacatatcacagtgattttccttt 59
Query: 61 ata 63
|||
Sbjct: 60 ata 62
>37488_dya-mir-5:mirbase
Length = 64
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
Query: 61 ataa 64
||||
Sbjct: 61 ataa 64
>36082_dan-mir-5:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 3e-12
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttcccga---acatatcacagtgattttcc 57
||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60
Query: 58 tttataa 64
|||||||
Sbjct: 61 tttataa 67
>36758_dmo-mir-5:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 5e-11
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgttc--ccga-acatatcacagtgattttcc 57
||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>36831_dpe-mir-5:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttg-ttc-ccga-acatatcacagtgattttcc 57
||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>36907_dps-mir-5:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttg-ttc-ccga-acatatcacagtgattttcc 57
||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>37334_dvi-mir-5:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgagttgtt---cccgaacatatcacagtgattttcc 57
||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
Query: 58 tttata 63
||||||
Sbjct: 62 tttata 67
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 acatatcacagtgattttcctttata 63
||||||||||||||||||||||||||
Sbjct: 44 acatatcacagtgattttcctttata 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatg 25
|||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatg 27
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 acatatcacagtgattttcctttata 63
||||||||||||||||||||||||||
Sbjct: 44 acatatcacagtgattttcctttata 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatg 25
|||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatg 27
>37409_dwi-mir-5:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatg 25
|||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatg 27
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 atatcacagtgattttcctttata 63
||||||||||||||||||||||||
Sbjct: 46 atatcacagtgattttcctttata 69
